This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00177UP.1

USA/LOC_00177UP.1
L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
INSDC accession S
Bioproject accession
Biosample accession
Raw reads accession

Submission details

Submission ID
OK573220.1.S
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Files

Annotations

Alignment and QC

Total SNPs S
145
Total deleted nucs S
42
Length S
1616 (91.8%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A71T
  • T72G
  • G73T
  • A74G
  • G75T
  • A76T
  • A80G
  • A82C
  • A83G
  • A84G
  • A98T
  • A162C
  • A173G
  • C183T
  • A186G
  • A213G
  • T219C
  • G231A
Deletions

S segment

1562, 1656-1696
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:E12C
  • NP:M13L
  • NP:N14S
  • NP:K15R
  • NP:Y20F
  • NP:K45R
  • NP:A124T
  • NP:N125G
  • NP:Q179L
  • NP:R195H
  • NP:G245E
  • NP:V246I
  • NP:G301S
  • NP:R428K
  • NP:I436V
Deletions
N/A
Insertions
N/A

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