This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00177TR.1

USA/LOC_00177TR.1
L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
INSDC accession M
Bioproject accession
Biosample accession
Raw reads accession

Submission details

Submission ID
OK573219.1.M
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Files

Annotations

Alignment and QC

Total SNPs M
549
Total deleted nucs M
1
Total frame shifts M
1
Frame shifts M
GPC:149-1685(nt:531-5143)
Length M
4542 (83.3%)
Stop codons M
GPC:128,GPC:138,GPC:140
Total stop codons M
3
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • C466G
  • A467T
  • C468G
  • G469T
  • A470T
  • T472A
  • C473T
  • T474G
  • G475T
  • C476T
  • C477T
  • G480T
  • A482T
  • C484G
  • T487C
  • C490G
  • A493T
  • C495G
Deletions

M segment

530
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:T127C
  • GPC:S128*
  • GPC:L129C
  • GPC:P130F
  • GPC:S131I
  • GPC:S132W
  • GPC:S134R
  • GPC:P136R
  • GPC:S137D
  • GPC:T138*
  • GPC:S139K
  • GPC:Q140*
  • GPC:G141I
  • GPC:T142S
  • GPC:Y144R
  • GPC:P145M
  • GPC:R147C
Deletions

GPC

GPC:148
Insertions
N/A

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