This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Enterovirus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Enterovirus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_00177ST.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/LOC_00177ST.1/2018
T. F. F. Ng,
E. Reynolds,
C. J. Castro &
W. A. Nix
Sample details
Collection date
2018
Collection date (lower bound)
2018-01-01
Collection date (upper bound)
2018-12-31
Earliest release date
2019-08-26
Collection country
USA
Collection subdivision level 1
CO
Isolate name
USA/CO/2018-23164
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-06 07:30
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Centers for Disease Control and Prevention, Polio and Picornavirus Laboratory Branch
INSDC
NCBI release date
2019-08-26
NCBI update date
2019-09-03
INSDC accession
MN245986.1
Bioproject accession
PRJNA322324
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
7324
Total SNPs
876
Total inserted nucs
1
Total deleted nucs
36
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.89%
Total stop codons
0
Submission details
Submission ID
MN245986.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-06 07:30:18 UTC
Date released
2026-02-06 07:42:47 UTC
Clade
Clade EV-D68
B3
Genotype
Genotype
EV-D68
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
C
12
T
T
61
C
C
62
T
A
88
T
T
89
C
C
95
T
C
101
T
C
106
T
C
122
T
A
126
G
A
140
G
T
158
C
T
172
C
G
197
A
C
203
T
T
222
C
A
232
T
T
262
C
Show more
Deletions
619, 688-722
Insertions
ins_28:C
Amino acid mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
V
37
I
2A:
R
65
K
2A:
N
84
S
2A:
A
99
V
2A:
V
144
A
2B
2B:
I
64
V
2C
2C:
T
34
I
2C:
K
58
N
2C:
R
72
Q
2C:
S
98
A
2C:
A
102
M
2C:
N
273
G
2C:
T
275
A
2C:
T
277
V
2C:
V
304
I
3A
3A:
A
13
T
3A:
V
53
L
3C
3C:
I
46
T
3C:
N
50
D
3C:
C
93
Y
3D
3D:
N
6
S
3D:
M
11
V
3D:
S
41
P
3D:
N
95
S
3D:
E
101
D
3D:
Q
130
H
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
I
360
V
3D:
T
442
I
VP1
VP1:
S
1
I
VP1:
N
2
D
VP1:
V
13
I
VP1:
G
76
S
VP1:
K
84
R
VP1:
N
90
D
VP1:
A
92
T
VP1:
S
95
T
VP1:
G
97
Q
VP1:
H
99
D
VP1:
K
110
R
VP1:
N
140
D
VP1:
N
142
S
VP1:
D
144
N
VP1:
S
145
N
VP1:
M
148
V
VP1:
K
168
E
VP1:
E
169
K
Show more
VP2
VP2:
S
59
A
VP2:
S
73
A
VP2:
N
74
T
VP2:
Y
98
H
VP2:
D
136
N
VP2:
N
144
D
VP2:
R
151
A
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
V
225
M
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
S
VP3:
N
62
V
VP3:
R
68
K
VP3:
V
73
A
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
S
180
N
VP4
VP4:
I
18
V
Deletions
None
Insertions
None
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue