This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00177J9.1

Spain/LOC_00177J9.1/2016-10-17
M. P. Sanchez-Seco, M. J. Sierra, A. Estrada-Pe, F. Valcarcel, R. Molina, E. R. de Arellano, A. S. Olmeda, L. G. San Miguel, M. Jimenez, L. J. Romero, A. Negredo & A. A. Negredo

National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral diseases

Sample details

Collection date
2016-10-17
Earliest release date
2023-02-13
Sampling location
Spain
Isolate name
Madrid_115_2016

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-02-13
INSDC accession S

Submission details

Submission ID
OK082060.1.S
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
81
Length S
591 (32.7%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C150T
  • G153A
  • G155A
  • T166C
  • G174A
  • A186G
  • C192T
  • C228T
  • G231A
  • T237A
  • G246A
  • A252C
  • T258C
  • T273C
  • G282T
  • C294T
  • C300T
  • G306C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:S39N
  • NP:S109N
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
Deletions
N/A
Insertions
N/A

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