This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00177EJ.1

Display Name: Switzerland/LOC_00177EJ.1/2018-08-29
R. Dyrdak, E. Hodcroft, R. Neher, J. Albert, L. Thebo, R. Poelman, E. Wollants, H. Niesters, D. Garcia Martinez de Artola, A. Anton Pagarolas, J. Reist, A. Egli & C. Andres

Sample details

Collection date
2018-08-29
Collection date (lower bound)
2018-08-29
Collection date (upper bound)
2018-08-29
Earliest release date
2020-03-16
Collection country
Switzerland
Isolate name
EVD68_CHE_001_180829_NFLG

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-06 07:30insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Karolinska University Hospital, Department of Clinical Microbiology

INSDC

NCBI release date
2020-03-16
NCBI update date
2020-03-16
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7194
Total SNPs
888
Total inserted nucs
6
Total deleted nucs
26
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
97.92%
Total stop codons
0

Submission details

Submission ID
MN245406.1
Submitting group
Date submitted
2026-02-06 07:30:18 UTC
Date released
2026-02-06 07:42:47 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • A88T
  • T89A
  • C101T
  • C106T
  • T118C
  • C122T
  • A147G
  • C156T
  • T157C
  • T158C
  • A159G
  • C177T
  • T187C
  • C203T
  • A219G
  • T222C
  • A232T
  • T262C
    • Deletions
    681-703, 2806-2808
    Insertions
    ins_3303:ATCCGG

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    2A

  • 2A:I22T
  • 2A:R67K
  • 2A:I71V
  • 2A:V144A

    • 2B

  • 2B:N23S
  • 2B:I64V

    • 2C

  • 2C:N30S
  • 2C:T34N
  • 2C:K58S
  • 2C:R72Q
  • 2C:R88K
  • 2C:S98A
  • 2C:A102T
  • 2C:I154V
  • 2C:N273D
  • 2C:T275A
  • 2C:V304I
  • 2C:T317I

    • 3A

  • 3A:I68V

    • 3B

  • 3B:I6V

    • 3C

  • 3C:V30I
  • 3C:Y31H
  • 3C:R55K
  • 3C:C93Y

    • 3D

  • 3D:M11V
  • 3D:V88I
  • 3D:N95S
  • 3D:E101D
  • 3D:S135T
  • 3D:K139R
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:V349L
  • 3D:I360V

    • VP1

  • VP1:S1L
  • VP1:N2E
  • VP1:G6E
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95E
  • VP1:G97R
  • VP1:T98V
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
  • VP1:K168E
  • VP1:E169K
  • VP1:I187V
  • VP1:M269L

    • VP2

  • VP2:N40K
  • VP2:S59A
  • VP2:R67K
  • VP2:S73T
  • VP2:N74E
  • VP2:Y98H
  • VP2:D136N
  • VP2:N144D
  • VP2:R151E
  • VP2:T154I
  • VP2:I167L
  • VP2:V195A
  • VP2:M222V
  • VP2:V225M
  • VP2:T247A

    • VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:D59E
  • VP3:G60N
  • VP3:N62V
  • VP3:E65Q
  • VP3:R68K
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:I153V
  • VP3:I163V
  • VP3:I166V
  • VP3:S180N
  • VP3:S204N
  • VP3:D208N
  • VP3:I216V
    • Deletions
    VP1:140
    Insertions
    ins_VP1:306:RL

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