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LOC_0016Z5C.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_0016Z5C.1/2016-04-22
A. Volynkina,
E. Kotenev &
A. Kolosov
Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections
Sample details
Collection date
2016-04-22
Earliest release date
2020-07-27
Sampling location
Russia
Isolate name
39-ROS/TI-2016
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-07-27
INSDC accession L
MN624924.1
INSDC accession M
MN624693.1
INSDC accession S
MN624462.1
Submission details
Submission ID
MN624924.1.L/MN624693.1.M/MN624462.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Dermacentor marginatus
Files
Annotations
LOC_0016Z5C.1.embl
Alignment and QC
Total SNPs L
41
Length L
437 (3.61%)
Variant L
False
Total SNPs M
72
Length M
435 (7.97%)
Variant M
False
Total SNPs S
82
Length S
538 (29.8%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
131
A
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
C
205
T
T
229
C
A
230
G
A
240
C
T
241
C
T
253
C
T
254
A
G
264
A
C
265
T
A
268
G
C
276
T
Show more
M segment
C
4640
T
C
4648
T
A
4660
G
T
4672
C
A
4685
G
A
4690
G
T
4693
C
A
4709
G
G
4714
A
C
4720
T
A
4723
G
A
4726
G
T
4738
A
T
4739
C
G
4741
A
C
4744
T
A
4747
G
T
4750
C
Show more
S segment
C
99
T
A
105
G
A
108
G
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
C
171
T
A
186
G
T
195
C
C
201
T
A
213
G
T
219
C
C
228
T
T
234
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
K
1533
E
GPC:
N
1541
D
GPC:
N
1564
D
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
V
1595
F
GPC:
F
1600
L
GPC:
T
1601
L
GPC:
T
1604
A
GPC:
I
1607
V
GPC:
I
1610
V
GPC:
M
1614
V
GPC:
R
1618
K
GPC:
F
1633
L
GPC:
H
1637
L
GPC:
K
1648
R
NP
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
RdRp
RdRp:
S
19
T
RdRp:
N
52
D
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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