This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011G71.1

Guinea/LOC_0011G71.1/2024-12-13
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-13
Earliest release date
2025-08-09
Sampling location
Guinea
Isolate name
752

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-09
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
PV987610.1.L/PV987602.1.M/PV987594.1.S
Submitting group
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
500
Total inserted nucs L
3
Total unknown nucs L
1226
Length L
11970 (88.7%)
Variant L
False
Total SNPs S
202
Total inserted nucs S
2
Total unknown nucs S
112
Length S
1655 (85.3%)
Variant S
False
Total SNPs M
553
Total unknown nucs M
627
Length M
3895 (59.9%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G93A
  • A113G
  • G175A
  • G190A
  • C193T
  • C205T
  • G217A
  • C223T
  • C244T
  • T250C
  • T253C
  • T254A
  • G301A
  • C313T
  • G328A
  • T340C
  • C343T
  • G352A

M segment

  • G577A
  • T578A
  • A582G
  • A583C
  • T584C
  • C589A
  • G593A
  • A594C
  • T595A
  • A597G
  • T599A
  • T600C
  • C603A
  • A604G
  • A609G
  • C610T
  • C616A
  • C617T

S segment

  • G4T
  • T16A
  • C31G
  • G34A
  • C66T
  • A83G
  • A84G
  • A98T
  • A102G
  • G107A
  • G118A
  • G120A
  • C126T
  • C138T
  • T139C
  • C150T
  • G153A
  • T159C
Deletions
N/A
Insertions

L segment

ins_6460:AAA

S segment

ins_0:GT

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:S164T
  • GPC:K165S
  • GPC:S166P
  • GPC:D169T
  • GPC:N170S
  • GPC:L171T
  • GPC:A172E
  • GPC:N174S
  • GPC:H177S
  • GPC:P178S
  • GPC:A179V
  • GPC:T180I
  • GPC:P186L
  • GPC:P187S
  • GPC:T188P
  • GPC:A190T
  • GPC:K192A
  • GPC:E195G

NP

  • NP:K15R
  • NP:Y20F
  • NP:G23E
  • NP:V27I
  • NP:Y34H
  • NP:S109N
  • NP:D116E
  • NP:A124S
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
  • RdRp:G778D
  • RdRp:N779S
  • RdRp:S782D
  • RdRp:I783V
  • RdRp:A1038T
Deletions
N/A
Insertions

RdRp

ins_RdRp:2129:E

Report an issue with this sequence or metadata

Create GitHub issue