This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011G2B.1

Guinea/LOC_0011G2B.1/2024-12-11
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, M. Y. Kartashov, A. V. Shipovalov, A. B. Ibrahim, E. A. Basov, A. P. Smolina, N. P. Guseva, T. A. Polunina, N. V. Kotova, S. D. Katyshev, S. Boumbaly & M. S. Traore

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2024-12-11
Earliest release date
2025-08-09
Sampling location
Guinea
Isolate name
650

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-09
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
PV987605.1.L/PV987597.1.M/PV987589.1.S
Submitting group
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
417
Total inserted nucs L
3
Total unknown nucs L
799
Length L
11970 (92.2%)
Variant L
False
Total SNPs S
206
Total inserted nucs S
2
Total unknown nucs S
96
Length S
1655 (86.2%)
Variant S
False
Total SNPs M
313
Total unknown nucs M
851
Length M
2921 (37.9%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • G93A
  • G112C
  • A113G
  • C133T
  • C193T
  • C205T
  • G217A
  • A220G
  • C223T
  • T229C
  • T253C
  • T254A
  • G286A
  • G301A
  • C313T
  • A316G
  • C331T
  • T340C

M segment

  • T1548A
  • A1551G
  • A1552G
  • G1554A
  • A1558G
  • A1561G
  • C1573T
  • C1582A
  • G1588A
  • T1594C
  • A1603G
  • T1606C
  • A1609G
  • G1617A
  • A1624C
  • A1625C
  • T1633C
  • G1636A

S segment

  • G4T
  • T16A
  • C31G
  • G34A
  • A51G
  • C66T
  • A83G
  • A84G
  • A98T
  • A102G
  • G120A
  • C126T
  • C138T
  • T139C
  • C150T
  • G153A
  • T159C
  • T166C
Deletions
N/A
Insertions

L segment

ins_6457:AAN

S segment

ins_0:GT

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:K488R
  • GPC:G489E
  • GPC:R510K
  • GPC:T513P
  • GPC:G524D
  • GPC:D525G
  • GPC:G543N
  • GPC:V561I
  • GPC:V578I
  • GPC:R579K
  • GPC:T589S
  • GPC:G590E
  • GPC:K591R
  • GPC:S592P
  • GPC:I598T
  • GPC:K601E
  • GPC:K603R
  • GPC:Y606F

NP

  • NP:K15R
  • NP:Y20F
  • NP:Y34H
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A271S
  • NP:Q405L
  • NP:R428K
  • NP:T439K

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:C422Y
  • RdRp:S498N
  • RdRp:I505T
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:P774L
  • RdRp:S782D
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:N885K
  • RdRp:A1038T
  • RdRp:K1167R
  • RdRp:V1228I
Deletions
N/A
Insertions

RdRp

ins_RdRp:2127:X

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