This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011FWP.1

France/LOC_0011FWP.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
3445

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession S

Submission details

Submission ID
PV976886.1.S
Submitting group
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
115
Total inserted nucs S
16
Total deleted nucs S
24
Total unknown nucs S
627
Total frame shifts S
3
Frame shifts S
NP:31-93(nt:130-318),NP:172-230(nt:552-728),NP:252-483(nt:792-1488)
Length S
1531 (50.5%)
Stop codons S
NP:135,NP:156
Total stop codons S
2
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C150T
  • A162C
  • C171T
  • A193G
  • T204C
  • T207C
  • A213G
  • C225T
  • A227C
  • C228A
  • G229T
  • C230G
  • G231T
  • T234C
  • G246A
  • T258C
  • T259G
  • G260T
Deletions

S segment

467-469, 541-551, 649, 729, 787-791, 841, 842, 1562
Insertions

S segment

ins_129:C, ins_231:CGC, ins_318:CC, ins_567:CATGGTCGCT

Amino acid mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:L26D
  • NP:V27T
  • NP:D28F
  • NP:E94K
  • NP:W95R
  • NP:K135*
  • NP:A143D
  • NP:Y156*
  • NP:E161D
  • NP:K237S
  • NP:A239Q
  • NP:E240G
  • NP:T241D
  • NP:E242R
  • NP:G243R
  • NP:G245V
  • NP:V246L
Deletions

NP

NP:144, NP:168-171, NP:250, NP:251
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue