This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011FUT.1

France/LOC_0011FUT.1/2024
M. Gasparine & A. Falchi

University of Corsica, Unite des Virus Emergents

Sample details

Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
590

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-08-10
INSDC accession M
INSDC accession S

Submission details

Submission ID
PV976884.1.M/PV976887.1.S
Submitting group
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
93
Total inserted nucs S
16
Length S
1673 (91.7%)
Variant S
False
Total SNPs M
562
Total inserted nucs M
19
Total deleted nucs M
14
Total unknown nucs M
3191
Total frame shifts M
8
Frame shifts M
GPC:49-84(nt:221-328),GPC:95-124(nt:359-448),GPC:336-343(nt:1082-1105),GPC:367-541(nt:1173-1698),GPC:558-576(nt:1747-1804),GPC:1099-1163(nt:3370-3565),GPC:1180-1672(nt:3612-5092),GPC:1683-1701(nt:5123-5179)
Length M
5206 (37.2%)
Stop codons M
GPC:48
Total stop codons M
1
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

M segment

  • C3T
  • A5T
  • G6C
  • C7A
  • G8A
  • C9A
  • C10G
  • G11A
  • C15A
  • C17T
  • C18T
  • C21G
  • G24A
  • G29A
  • C30G
  • G31T
  • G32A
  • G36A

S segment

  • G4T
  • T16A
  • C31G
  • A84G
  • A98T
  • A108G
  • C150T
  • A193G
  • A213G
  • C225T
  • C228T
  • A311G
  • G330A
  • A333G
  • T372C
  • T384C
  • T387C
  • A393G
Deletions

M segment

329, 330, 358, 1171, 1172, 1550, 1699, 1745, 1746, 1805, 3566, 3567, 3611, 3709
Insertions

M segment

ins_75:GAA, ins_220:TA, ins_448:T, ins_1081:G, ins_1105:TT, ins_1330:C, ins_3369:C, ins_3415:T, ins_5092:AAAAA, ins_5122:A, ins_5137:A

S segment

ins_0:TCTCAAAGAAACACGT

Amino acid mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

GPC

  • GPC:L2F
  • GPC:F3L
  • GPC:E6K
  • GPC:H7F
  • GPC:I11T
  • GPC:V14F
  • GPC:I18L
  • GPC:L19Y
  • GPC:W20G
  • GPC:S21V
  • GPC:G22A
  • GPC:G23A
  • GPC:A26P
  • GPC:D27V
  • GPC:A29S
  • GPC:S33T
  • GPC:M35S
  • GPC:G38A

NP

  • NP:Y20F
  • NP:S52G
  • NP:K91R
  • NP:V246I
Deletions

GPC

GPC:85, GPC:366, GPC:557, GPC:577, GPC:1164, GPC:1179
Insertions

GPC

ins_GPC:344:N, ins_GPC:1671:X

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