This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_0011FSX.1
Download
Download FASTA
Download metadata TSV
France/LOC_0011FSX.1/2024
M. Gasparine
University of Corsica, Unite des Virus Emergents
Sample details
Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
590
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-08-10
INSDC accession L
PV976882.1
Submission details
Submission ID
PV976882.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Ixodoidea
Files
Annotations
LOC_0011FSX.1.embl
Alignment and QC
Total SNPs L
527
Total inserted nucs L
130
Total deleted nucs L
86
Total unknown nucs L
2017
Total frame shifts L
32
Frame shifts L
RdRp:563-634(nt:1763-1976),RdRp:642-690(nt:2000-2146),RdRp:699-708(nt:2169-2200),RdRp:717-1033(nt:2225-3175),RdRp:1048-1636(nt:3216-4983),RdRp:1645-1652(nt:5009-5031),RdRp:1666-1683(nt:5070-5125),RdRp:1695-1723(nt:5159-5245),RdRp:1746-1754(nt:5311-5336),RdRp:1761-1780(nt:5357-5416),RdRp:1789-1837(nt:5440-5587),RdRp:1854-2040(nt:5636-6196),RdRp:2047-2058(nt:6213-6249),...
Show more
Length L
10913 (73.1%)
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
reference
Substitutions
L segment
A
1375
G
G
1408
A
T
1420
C
C
1435
T
C
1495
T
T
1590
C
C
1591
T
A
1641
G
T
1710
C
T
1732
C
T
1802
G
T
1877
C
A
1879
G
C
1927
T
G
1990
A
C
1999
T
G
2000
T
C
2006
T
Show more
Deletions
L segment
1977, 2069, 2168, 2186, 2201, 2224, 2234, 3176, 3212-3215, 4396, 4822, 4823, 5086, 5099, 5100, 5126, 5127, 5158, 5198-5200, 5237, 5246, 5309, 5310, 5337, 5390-5392, 5417, 5480, 5498, 5499, 5588, 5635, 6047, 6197, 6212, 6506, 6586, 6620, 6670, 6682, 6725, 6959-6962, 6987, 6988, 7037, 7038, 7076, 7110, 7111, 7157, 7158, 7397, 7496, 7508, 7509, 7667, 8117, 8279, 8695, 8747-8751, 8831,...
Show more
Insertions
L segment
ins_1762:G, ins_1999:T, ins_2032:A, ins_2116:A, ins_2146:TGGA, ins_4983:C, ins_5008:CT, ins_5031:C, ins_5069:AT, ins_5257:TTG, ins_5356:A, ins_5439:T, ins_5458:AGCT, ins_5549:TTACC, ins_6249:CACT, ins_6304:TGCAG, ins_6320:G, ins_6345:GCCTAAG, ins_6364:T, ins_6391:AC, ins_6482:CAC, ins_6526:C, ins_6553:T, ins_6714:ATG, ins_6771:C, ins_7170:GCC, ins_7216:A, ins_7266:G, ins_8173:A,...
Show more
Amino acid mutations
Mutations called relative to the
NC_005301.3
reference
Substitutions
RdRp
RdRp:
I
505
T
RdRp:
K
522
R
RdRp:
L
545
P
RdRp:
I
1035
K
RdRp:
K
1037
I
RdRp:
V
1039
D
RdRp:
D
1040
N
RdRp:
E
1041
R
RdRp:
T
1042
S
RdRp:
A
1043
I
RdRp:
N
1044
A
RdRp:
E
1643
G
RdRp:
P
1660
T
RdRp:
L
1665
H
RdRp:
T
1692
I
RdRp:
P
1725
E
RdRp:
F
1726
L
RdRp:
Y
1755
T
Show more
Deletions
RdRp
RdRp:698, RdRp:709, RdRp:1034, RdRp:1046, RdRp:1047, RdRp:1637, RdRp:1684, RdRp:1724, RdRp:1727, RdRp:1745, RdRp:1781, RdRp:1838, RdRp:2041, RdRp:2046, RdRp:2144, RdRp:2182, RdRp:2217, RdRp:2295-2297, RdRp:2361, RdRp:2364, RdRp:2365, RdRp:2474, RdRp:2478, RdRp:2531, RdRp:2681, RdRp:2735, RdRp:2891, RdRp:2892, RdRp:2919, RdRp:2934, RdRp:3372, RdRp:3453, RdRp:3900
Insertions
RdRp
ins_RdRp:691:GL, ins_RdRp:1643:T, ins_RdRp:2087:HYKAMP, ins_RdRp:2774:M, ins_RdRp:2838:XXP, ins_RdRp:3539:M, ins_RdRp:3583:XX
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue