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LOC_0011FRZ.1
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France/LOC_0011FRZ.1/2024
M. Gasparine
University of Corsica, Unite des Virus Emergents
Sample details
Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
ECH
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-08-10
INSDC accession L
PV976881.1
Submission details
Submission ID
PV976881.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Ixodoidea
Files
Annotations
LOC_0011FRZ.1.embl
Alignment and QC
Total SNPs L
669
Total inserted nucs L
82
Total deleted nucs L
92
Total unknown nucs L
309
Total frame shifts L
26
Frame shifts L
RdRp:497-590(nt:1563-1846),RdRp:596-617(nt:1862-1926),RdRp:648-657(nt:2016-2046),RdRp:734-797(nt:2274-2467),RdRp:817-1073(nt:2525-3294),RdRp:1098-1107(nt:3368-3397),RdRp:1115-1121(nt:3417-3439),RdRp:1130-1139(nt:3464-3492),RdRp:1162-1168(nt:3558-3580),RdRp:1173-1178(nt:3593-3608),RdRp:1189-1204(nt:3640-3688),RdRp:1216-1269(nt:3722-3883),RdRp:1285-1311(nt:3927-4009),...
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Length L
10857 (87.2%)
Stop codons L
RdRp:1206,RdRp:3578,RdRp:3693
Total stop codons L
3
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
reference
Substitutions
L segment
G
1321
C
A
1375
G
G
1408
A
T
1420
C
C
1435
T
G
1448
C
C
1495
T
T
1590
C
T
1732
C
C
1743
T
G
1756
C
G
1797
A
G
1817
C
T
1877
C
A
1879
G
G
1980
C
C
2006
T
G
2041
A
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Deletions
L segment
1562, 1604, 1927, 2015, 2273, 2288, 2468, 2524, 2894, 3295, 3364-3367, 3416, 3440, 3441, 3463, 3476, 3493, 3557, 3812-3814, 3884-3890, 3926, 4010, 4011, 4043, 4061, 4117, 4130-4133, 5045, 7277, 7438, 8696, 8920, 8954, 8955, 8981, 9422, 9443, 10328, 10640, 10641, 10675, 10676, 10769-10772, 10787, 10850-10852, 10874, 10895-10900, 11171-11173, 11268-11272, 11306-11308, 11336, 11703-11706,...
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Insertions
L segment
ins_1657:C, ins_1846:C, ins_1861:A, ins_2046:G, ins_3397:G, ins_3580:G, ins_3592:TA, ins_3608:C, ins_3639:CAGA, ins_3670:G, ins_3688:C, ins_3721:T, ins_4159:GA, ins_4180:C, ins_4201:G, ins_4250:C, ins_4954:AG, ins_8650:A, ins_8896:GA, ins_10690:AG, ins_10702:TC, ins_10718:G, ins_10960:G, ins_10998:GC, ins_11026:T, ins_11041:TGA, ins_11100:GA, ins_11114:G, ins_11217:G, ins_11233:A,...
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Amino acid mutations
Mutations called relative to the
NC_005301.3
reference
Substitutions
RdRp
RdRp:
Q
415
H
RdRp:
D
458
H
RdRp:
R
635
P
RdRp:
K
673
E
RdRp:
D
693
N
RdRp:
S
695
Q
RdRp:
R
704
K
RdRp:
S
724
P
RdRp:
E
804
K
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
Q
815
E
RdRp:
C
1079
R
RdRp:
R
1081
T
RdRp:
V
1087
M
RdRp:
C
1091
Y
RdRp:
E
1092
G
RdRp:
N
1093
E
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Deletions
RdRp
RdRp:496, RdRp:647, RdRp:733, RdRp:798, RdRp:1095-1097, RdRp:1114, RdRp:1122, RdRp:1161, RdRp:1270-1272, RdRp:1284, RdRp:1312-1314, RdRp:1323, RdRp:1352, RdRp:1353, RdRp:1657, RdRp:2874, RdRp:3116, RdRp:3123, RdRp:3534, RdRp:3571, RdRp:3593, RdRp:3600, RdRp:3629, RdRp:3897, RdRp:3898
Insertions
RdRp
ins_RdRp:1178:Q, ins_RdRp:1187:YR, ins_RdRp:1391:A, ins_RdRp:3655:E*
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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