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LOC_0011FP3.1
Download
Download FASTA
Download metadata TSV
France/LOC_0011FP3.1/2024
M. Gasparine &
A. Falchi
University of Corsica, Unite des Virus Emergents
Sample details
Collection date
2024
Earliest release date
2025-08-10
Sampling location
France
Isolate name
3154
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-08-10
INSDC accession L
PV976879.1
INSDC accession M
PV976878.1
INSDC accession S
PV976895.1
Submission details
Submission ID
PV976879.1.L/PV976878.1.M/PV976895.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Ixodoidea
Files
Annotations
LOC_0011FP3.1.embl
Alignment and QC
Total SNPs L
290
Total inserted nucs L
52
Length L
12157 (100%)
Variant L
False
Total SNPs M
708
Total inserted nucs M
4
Length M
5366 (98.3%)
Variant M
False
Total SNPs S
45
Total inserted nucs S
16
Length S
1673 (91.7%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
C
64
T
T
65
C
T
70
C
G
93
A
C
100
T
T
151
C
T
160
C
T
254
A
A
298
G
C
313
T
T
340
C
C
427
T
T
550
G
G
553
A
A
563
G
C
568
T
G
619
A
A
677
G
Show more
M segment
G
65
A
T
81
C
C
82
T
G
103
A
G
113
A
T
115
C
T
116
C
C
118
T
G
120
A
T
122
C
G
124
A
A
127
G
A
139
G
G
142
A
A
143
G
A
149
C
C
151
T
C
155
T
Show more
S segment
T
16
A
A
98
T
A
162
G
T
165
C
C
171
T
T
204
C
T
258
C
A
311
G
G
339
A
A
396
G
C
471
T
A
474
G
G
477
A
C
636
T
G
765
A
G
822
A
C
846
T
A
847
G
Show more
Deletions
N/A
Insertions
L segment
ins_12097:CTCATTTCAGCTTCATCGTCATCGTTATTATTTTGGGGTGTGGGGGGAACGA
M segment
ins_0:TCTC
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
G
26
E
GPC:
E
28
I
GPC:
N
31
K
GPC:
H
33
D
GPC:
V
34
T
GPC:
D
39
S
GPC:
S
41
N
GPC:
Q
42
L
GPC:
P
44
S
GPC:
P
46
Q
GPC:
P
53
S
GPC:
V
54
I
Show more
NP
NP:
Y
20
F
NP:
K
91
R
NP:
R
270
G
NP:
T
429
I
NP:
S
451
P
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
T
163
A
RdRp:
S
201
G
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
R
1126
H
RdRp:
T
1182
I
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
V
1496
I
RdRp:
M
1647
L
RdRp:
P
1660
T
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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