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LOC_0011F72.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_0011F72.1/2023-05-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2023-05-07
Earliest release date
2025-06-15
Sampling location
Tajikistan
Isolate name
CCHFV_27_27
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-06-15
INSDC accession L
PV738571.1
INSDC accession S
PV738570.1
Submission details
Submission ID
PV738571.1.L/PV738570.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Hyalomma anatolicum
Files
Annotations
LOC_0011F72.1.embl
Alignment and QC
Total SNPs L
1249
Total inserted nucs L
2
Total ambiguous nucs L
25
Total unknown nucs L
2232
Length L
11876 (79.4%)
Variant L
False
Total SNPs S
181
Total ambiguous nucs S
5
Total unknown nucs S
9
Length S
1249 (68.4%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
T
49
C
A
53
G
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
C
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
Show more
S segment
A
423
G
C
429
T
T
430
C
G
432
C
A
435
G
C
456
T
C
471
T
A
474
G
G
477
A
T
480
C
C
481
T
G
483
A
A
487
C
T
513
C
C
519
T
G
522
A
G
543
A
C
555
T
Show more
Deletions
N/A
Insertions
L segment
ins_67:CT
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
G
259
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
S
124
C
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
S (unaligned)
L (aligned)
S (aligned)
Aligned amino acid sequences
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