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LOC_0011EJE.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_0011EJE.1/2023-07-12
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2023-07-12
Earliest release date
2025-04-05
Sampling location
Tajikistan
Isolate name
CCHFV_C7
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-04-05
INSDC accession L
PV390622.1
INSDC accession M
PV390615.1
INSDC accession S
PV390604.1
Submission details
Submission ID
PV390622.1.L/PV390615.1.M/PV390604.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0011EJE.1.embl
Alignment and QC
Total SNPs S
234
Total inserted nucs S
16
Total ambiguous nucs S
2
Length S
1673 (91.6%)
Variant S
False
Total SNPs L
1611
Total inserted nucs L
47
Total deleted nucs L
1
Total ambiguous nucs L
26
Total unknown nucs L
1
Length L
12131 (99.6%)
Variant L
False
Total SNPs M
1026
Total inserted nucs M
1
Total ambiguous nucs M
16
Total unknown nucs M
5
Length M
5311 (96.9%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
T
49
C
C
59
T
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
C
105
T
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
C
148
T
Show more
M segment
A
47
G
G
65
A
A
66
G
T
67
A
A
76
G
T
78
C
T
79
C
G
80
T
C
88
T
C
92
T
T
94
C
T
96
C
T
98
C
T
101
C
G
103
A
A
104
T
A
108
G
A
112
T
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
T
63
C
A
65
G
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
166
C
A
173
G
G
174
A
G
180
A
Show more
Deletions
L segment
11996
Insertions
L segment
ins_66:CC, ins_11931:AT, ins_12108:TACCATTCATTTCAGTTTGATTATTTCTAGGGTGKGGGGAGAA
M segment
ins_5165:A
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
F
10
L
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
S
GPC:
G
18
E
GPC:
K
19
G
GPC:
N
21
H
GPC:
P
23
L
GPC:
H
24
S
GPC:
E
28
Q
GPC:
N
30
S
GPC:
H
33
S
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
T
10
I
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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