This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011EGK.1

Tajikistan/LOC_0011EGK.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-23
Earliest release date
2025-04-05
Sampling location
Tajikistan
Isolate name
CCHFV_23_178

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-04-05
INSDC accession M
INSDC accession S

Submission details

Submission ID
PV390620.1.M/PV390613.1.S
Submitting group
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M
331
Total inserted nucs M
1
Total ambiguous nucs M
17
Total unknown nucs M
1647
Length M
3673 (36.8%)
Variant M
False
Total SNPs S
126
Total ambiguous nucs S
1
Total unknown nucs S
1
Length S
919 (50.8%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

M segment

  • T1663C
  • A1675G
  • A1678G
  • C1688T
  • A1705G
  • G1708A
  • G1709A
  • C1711T
  • T1714C
  • G1715A
  • C1717T
  • T1741C
  • G1744A
  • A1774G
  • A1780G
  • C1784T
  • G1786A
  • T1789C

S segment

  • A423G
  • C429T
  • T430C
  • G432C
  • A435G
  • C462T
  • C471T
  • A474G
  • G477A
  • T480C
  • C481T
  • G483A
  • A487C
  • C489T
  • A492G
  • C498T
  • G504A
  • T513C
Deletions
N/A
Insertions

M segment

ins_5165:A

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:V541I
  • GPC:G543S
  • GPC:R579K
  • GPC:I598T
  • GPC:K603R
  • GPC:Y606F
  • GPC:V630A
  • GPC:V637I
  • GPC:V663I
  • GPC:K669N
  • GPC:R688K
  • GPC:A710V
  • GPC:F713Y
  • GPC:I717V
  • GPC:F718V
  • GPC:R724K
  • GPC:T778M
  • GPC:R782K

NP

  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:V205I
  • NP:L235F
  • NP:R270K
  • NP:S275N
  • NP:R428K
Deletions
N/A
Insertions
N/A

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