This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0011EFM.1

Tajikistan/LOC_0011EFM.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

UK Health Security Agency, Research & Evaluation

Sample details

Collection date
2023-05-23
Earliest release date
2025-04-05
Sampling location
Tajikistan
Isolate name
CCHFV_14_169

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-04-05
INSDC accession S

Submission details

Submission ID
PV390612.1.S
Submitting group
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
184
Total ambiguous nucs S
9
Length S
1254 (68.9%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • A405G
  • A412T
  • A423G
  • C429T
  • T430C
  • A435G
  • C462T
  • C471T
  • A474G
  • G477A
  • T480C
  • C481T
  • G483A
  • A487C
  • C489T
  • C498T
  • G504A
  • T513C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N125Y
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:K263R
  • NP:R270K
  • NP:S275N
  • NP:R428K
Deletions
N/A
Insertions
N/A

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