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LOC_0011CR2.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_0011CR2.1/2024-01-01
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2024-01-01
Earliest release date
2024-11-12
Sampling location
Pakistan (Sindh)
Isolate name
CCHF/NIHPAK-1/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-11-12
INSDC accession L
PQ523730.1
INSDC accession S
PQ523723.1
Submission details
Submission ID
PQ523730.1.L/PQ523723.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0011CR2.1.embl
Alignment and QC
Total SNPs L
1565
Total inserted nucs L
1
Length L
11906 (98.3%)
Variant L
False
Total SNPs S
226
Total deleted nucs S
2
Length S
1629 (90.3%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
C
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
131
A
C
148
T
T
151
C
T
154
C
Show more
S segment
T
16
A
C
31
G
T
33
C
A
62
C
T
63
C
C
66
T
A
84
G
T
90
C
A
93
G
A
98
T
A
102
G
A
132
G
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
Show more
Deletions
S segment
1604, 1605
Insertions
L segment
ins_58:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
N
8
T
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
N
52
H
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
498
G
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
S (unaligned)
L (aligned)
S (aligned)
Aligned amino acid sequences
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