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LOC_0011CP6.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_0011CP6.1/2024-07-12
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2024-07-12
Earliest release date
2024-11-12
Sampling location
Pakistan (Punjab)
Isolate name
CCHF/NIHPAK-37/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-11-12
INSDC accession L
PQ523728.1
INSDC accession M
PQ523725.1
INSDC accession S
PQ523721.1
Submission details
Submission ID
PQ523728.1.L/PQ523725.1.M/PQ523721.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0011CP6.1.embl
Alignment and QC
Total SNPs M
1239
Total inserted nucs M
11
Total deleted nucs M
41
Length M
5345 (99.5%)
Variant M
False
Total SNPs L
1631
Total inserted nucs L
47
Length L
12140 (99.9%)
Variant L
False
Total SNPs S
220
Total inserted nucs S
1
Length S
1655 (91.6%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
T
131
A
Show more
M segment
G
29
A
C
30
G
G
31
T
G
32
A
G
36
A
G
37
A
A
39
T
A
40
G
A
41
T
G
43
A
T
44
A
G
45
C
G
46
T
C
47
T
G
48
T
T
49
G
C
51
G
G
52
C
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
G
153
A
T
166
C
A
173
G
C
183
T
A
186
G
C
201
T
Show more
Deletions
M segment
5211-5214, 5244, 5268-5303
Insertions
L segment
ins_58:T, ins_11917:CA, ins_12053:CTAC, ins_12086:CTACTATTCCAC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAAC
M segment
ins_5401:TGCGTGCCGCC
S segment
ins_0:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
1
N
GPC:
L
2
M
GPC:
F
3
L
GPC:
H
4
P
GPC:
F
5
L
GPC:
E
6
K
GPC:
H
7
S
GPC:
I
11
T
GPC:
V
14
I
GPC:
F
15
L
GPC:
I
18
L
GPC:
L
19
F
GPC:
G
23
S
GPC:
L
25
V
GPC:
A
26
T
GPC:
D
27
S
GPC:
E
28
G
GPC:
A
29
G
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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