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LOC_0011CN8.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_0011CN8.1/2024-05-02
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2024-05-02
Earliest release date
2024-11-12
Sampling location
Pakistan (Punjab)
Isolate name
CCHF/NIHPAK-7/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-11-12
INSDC accession L
PQ523727.1
INSDC accession M
PQ523724.1
INSDC accession S
PQ523720.1
Submission details
Submission ID
PQ523727.1.L/PQ523724.1.M/PQ523720.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:56:40 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0011CN8.1.embl
Alignment and QC
Total SNPs L
1653
Total inserted nucs L
48
Length L
12144 (99.9%)
Variant L
False
Total SNPs S
221
Total inserted nucs S
3
Length S
1651 (91.3%)
Variant S
False
Total SNPs M
127
Length M
5339 (97.8%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
A
35
G
G
43
T
T
47
C
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M segment
G
56
A
G
65
A
A
74
T
A
127
G
G
145
A
G
166
A
C
224
T
G
226
A
T
242
C
A
244
G
A
266
G
T
270
C
T
278
A
G
355
A
C
375
T
G
394
A
A
416
G
C
450
T
Show more
S segment
T
16
A
C
31
G
T
63
C
C
66
T
A
93
G
A
98
T
A
102
G
G
120
A
C
126
T
T
128
A
C
138
A
T
147
C
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
Show more
Deletions
N/A
Insertions
L segment
ins_58:T, ins_11917:CA, ins_12054:TACGATTTT, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACG
S segment
ins_0:CGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
P
46
S
GPC:
T
60
A
GPC:
V
61
A
GPC:
S
64
T
GPC:
P
96
L
GPC:
T
110
A
GPC:
P
121
L
GPC:
T
122
I
GPC:
S
131
N
GPC:
Y
144
H
GPC:
G
167
D
GPC:
T
180
A
GPC:
L
208
I
GPC:
H
210
Q
GPC:
S
211
L
GPC:
P
220
S
GPC:
V
229
I
GPC:
S
231
Y
Show more
NP
NP:
Y
20
F
NP:
F
30
Y
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
G
185
S
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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