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LOC_0011994.1
Download
Download FASTA
Download metadata TSV
France/LOC_0011994.1/2023
G. Piorkowski,
P. Kiwan,
S. Masse,
N. Ayhan,
R. Charrel,
X. de Lamballerie &
A. Falchi
IHU mediterranee, UMR190 Unite des Virus Emergents U1207
Sample details
Collection date
2023
Earliest release date
2024-06-25
Sampling location
France
Isolate name
1207
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-06-25
INSDC accession L
PP025040.1
INSDC accession M
PP025039.1
INSDC accession S
PP025038.1
Submission details
Submission ID
PP025040.1.L/PP025039.1.M/PP025038.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:55:27 UTC
Host
Host
Ixodoidea
Files
Annotations
LOC_0011994.1.embl
Alignment and QC
Total SNPs S
207
Total inserted nucs S
14
Total deleted nucs S
40
Total unknown nucs S
495
Length S
1498 (57%)
Variant S
False
Total SNPs L
228
Total deleted nucs L
7
Total unknown nucs L
119
Length L
11246 (92%)
Variant L
False
Total SNPs M
981
Total deleted nucs M
45
Total unknown nucs M
345
Length M
5075 (88.4%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
A
859
T
A
901
G
C
904
T
G
951
A
G
961
A
C
1015
T
C
1016
T
C
1019
T
A
1120
G
G
1174
A
C
1240
T
A
1338
G
A
1354
T
T
1420
C
C
1495
T
A
1501
G
C
1549
T
A
1555
G
Show more
M segment
A
253
T
A
257
G
A
260
G
C
261
A
G
263
A
C
267
T
A
268
G
A
271
G
G
272
A
A
273
G
T
274
C
T
276
C
C
282
T
A
283
C
G
284
A
A
286
C
T
290
C
T
291
C
Show more
S segment
C
144
T
T
147
C
C
150
T
G
155
A
T
156
C
T
159
G
A
162
G
T
165
C
T
166
C
G
168
T
A
173
G
G
180
A
A
186
G
C
192
T
A
193
G
C
198
A
G
216
A
C
228
T
Show more
Deletions
L segment
12026-12032
M segment
5213-5217, 5245, 5270-5290, 5314-5331
S segment
1490-1504, 1615-1639
Insertions
S segment
ins_1524:ATTTGTTCCAGATT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
T
61
A
GPC:
T
62
E
GPC:
A
63
T
GPC:
A
64
V
GPC:
D
66
S
GPC:
M
67
T
GPC:
T
69
I
GPC:
E
70
N
GPC:
L
72
P
GPC:
A
76
V
GPC:
A
77
T
GPC:
G
86
S
GPC:
N
88
D
GPC:
L
89
P
GPC:
P
90
Q
GPC:
R
93
N
GPC:
E
94
R
GPC:
A
95
E
Show more
NP
NP:
S
39
N
NP:
K
45
R
NP:
S
52
G
NP:
F
73
Y
NP:
A
100
T
NP:
A
154
S
NP:
Q
179
L
NP:
R
195
K
NP:
V
198
I
NP:
D
199
E
NP:
I
220
V
NP:
T
420
S
NP:
R
428
K
NP:
I
436
V
RdRp
RdRp:
R
292
Q
RdRp:
H
314
Y
RdRp:
N
421
S
RdRp:
I
505
T
RdRp:
C
648
R
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
D
771
E
RdRp:
E
776
K
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
R
896
S
RdRp:
G
1047
E
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
P
1660
T
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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