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LOC_0011978.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_0011978.1/2023-09-25
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2023-09-25
Earliest release date
2023-12-26
Sampling location
Pakistan
Isolate name
CCHF/NIHPAK-10/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-12-26
INSDC accession L
OR964930.1
INSDC accession M
OR964941.1
INSDC accession S
OR964919.1
Submission details
Submission ID
OR964930.1.L/OR964941.1.M/OR964919.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:50:49 UTC
Date released
2026-03-16 20:55:27 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0011978.1.embl
Alignment and QC
Total SNPs S
240
Total inserted nucs S
3
Length S
1651 (91.3%)
Variant S
False
Total SNPs M
1015
Total inserted nucs M
1
Total deleted nucs M
1
Total unknown nucs M
46
Length M
5341 (97%)
Variant M
False
Total SNPs L
1643
Total inserted nucs L
51
Total unknown nucs L
1
Length L
12155 (100%)
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
10
C
G
23
T
A
35
G
G
43
T
C
48
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M segment
G
46
T
A
47
G
G
52
A
A
53
C
G
65
A
A
66
G
T
67
A
T
68
C
G
72
T
A
76
G
T
78
C
T
79
C
A
86
G
T
87
C
C
88
T
A
89
G
T
94
C
T
96
C
Show more
S segment
T
16
A
C
31
G
A
51
G
G
60
A
T
63
C
A
69
G
T
72
C
G
75
A
A
83
G
A
84
G
T
90
C
A
93
G
A
98
T
A
102
G
A
105
G
C
126
A
T
128
A
C
129
T
Show more
Deletions
M segment
5253
Insertions
L segment
ins_58:T, ins_11915:AA, ins_12054:TAAAATTTT, ins_12083:ACTATTC, ins_12108:TTTGTTATTTCTGGGGTGTGGGGGGAACGATT
M segment
ins_5165:A
S segment
ins_0:CGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
1
V
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
P
GPC:
K
19
G
GPC:
N
21
H
GPC:
P
23
L
GPC:
H
24
S
GPC:
G
26
E
GPC:
E
28
Q
GPC:
H
29
Y
GPC:
N
31
S
GPC:
H
33
S
GPC:
V
34
I
GPC:
M
35
T
Show more
NP
NP:
K
15
R
NP:
Y
20
F
NP:
F
30
Y
NP:
S
39
N
NP:
K
45
R
NP:
V
83
A
NP:
S
109
N
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
R
195
H
NP:
D
199
E
NP:
V
205
I
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
R
428
K
NP:
A
450
S
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
E
203
D
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
V
214
I
RdRp:
I
223
V
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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