LOC_000TE1X.1

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Turkey/LOC_000TE1X.1/2022-05-25

Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date

2022-05-25

Earliest release date

2026-04-19

Sampling location

Turkey (Sivas, Koyulhisar, Akseki)

Isolate name

TRSCU/25-HK-S27/Koyulhisar/2022

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2026-04-19

INSDC accession L

PX875138.1

INSDC accession M

PX875033.1

Host

human (Homo sapiens)

Submission details

Submission ID

PX875138.1.L/PX875033.1.M

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-08-12 11:45:57 UTC

Date released

2026-08-12 11:52:00 UTC

Files

Annotations

LOC_000TE1X.1.embl

Alignment and QC

Total SNPs L

1321

Total inserted nucs L

Total deleted nucs L

Length L

12119 (99.9%)

Total SNPs M

1036

Total inserted nucs M

Total deleted nucs M

Length M

5329 (99.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

G23T
A35G
A42T
G43C
T49C
A50G
A53G
T58C
C59T
C63T
C64G
T66C
A72G
A73T
C82T
A91G
G93A
C100T

M

T40C
G50A
A51G
A61T
T67C
A69G
T71A
G76C
A80G
T83C
G84A
C85T
T86C
C92T
T100C
T102C
C103T
T105A

Deletions

L

12093, 12094

M

333-335

Insertions

L

ins_67:C, ins_11924:A, ins_12108:TTCATTATTTGCAGGGTGTGGGGGGAAC

M

ins_5171:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references