This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000T7RP.1

Spain/LOC_000T7RP.1/2021
M. A. Habela Martinez-Estellez, T. del Peso Pimentel, A. C. Grande Avila, A. M. Garcia Lopez, J. Mata-Garcia Soldado, Md. M. Tapia Perea, F. Molero Sanz, L. Herrero Romero, A. S. Olmeda, F. Valcarcel, P. Sanchez-Mora, A. Negredo Anton & M. P. Sanchez-Seco

Instituto de Salud Carlos III, Arboviruses

Sample details

Collection date
2021
Earliest release date
2026-03-10
Sampling location
Spain
Isolate name
Caceres_64_2021

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-03-10
INSDC accession S segment

Host

Host

Submission details

Submission ID
PX000070.1.S
Submitting group
Date submitted
2026-08-07 12:00:27 UTC
Date released
2026-08-07 12:04:51 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
66
Length S segment
502 (27.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C150T
  • G153A
  • G155A
  • T166C
  • G174A
  • A186G
  • C192T
  • C228T
  • G231A
  • T237A
  • G246A
  • A252C
  • T258C
  • T273C
  • G282T
  • T288C
  • C294T
  • C300T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:S39N
  • NP:T102A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue