This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000T7QR.1

China/LOC_000T7QR.1/2010-06
K. Zhao, X. Han, G. Wang, W. Hu, W. Zhang, X. F. Yu & X.-F. Yu

Johns Hopkins Bloomberg School of Public Health, Molecular Microbiology and Immunology

Sample details

Collection date
2010-06
Earliest release date
2011-07-24
Sampling location
China
Isolate name
changchun025

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-07-24
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
HQ450578.1
Submitting group
Date submitted
2026-07-20 10:39:16 UTC
Date released
2026-07-20 10:42:17 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
214
Length
1022 (13.8%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • T3120C
  • A3123G
  • C3126T
  • C3129T
  • C3141T
  • C3150T
  • A3153G
  • T3156A
  • C3162G
  • A3171G
  • C3174A
  • C3177A
  • T3180C
  • T3183C
  • C3186T
  • T3192G
  • C3193A
  • G3198A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

2A

  • 2A:D57N
  • 2A:R68K
  • 2A:S77T

2B

  • 2B:T15M
  • 2B:N30S
  • 2B:I47V
  • 2B:I57V
  • 2B:A96V

VP1

  • VP1:K285R
Deletions
N/A
Insertions
N/A

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