This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000T7K1.1

South_Africa/LOC_000T7K1.1/2008-08-07
M. Venter, S. Human, D. Zaayman, T. Gerdes, P. Leman, J. Williams, J. Steyl, C. Donnellan, J. Paweska, H. Setzkorn, G. Rous, S. Murray, R. Parker & R. Swanepoel

University of Pretoria/NHLS Tshwane Academic Division, Medical Virology

Sample details

Collection date
2008-08-07
Earliest release date
2009-12-01
Sampling location
South Africa
Isolate name
SAE134/08

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2009-12-01
NCBI update date
2016-07-24
INSDC accession

Host

Host

Submission details

Submission ID
FJ464380.1
Submitting group
Date submitted
2026-10-05 17:00:54 UTC
Date released
2026-10-05 17:02:34 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
32
Length
167 (1.51%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C9123G
  • A9126G
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • T9204A
  • C9207T
  • G9210A
  • G9216A
  • C9219A
  • C9222G
  • A9225G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:R522K
  • NS5:R527K
Deletions
N/A
Insertions
N/A

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