This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SZRZ.1

Russia/169-02-Uu/2002-01-01
A. E. Platonov, T. A. Shopenskaya, M. V. Fedorova, L. S. Karan, A. I. Frolov, G. V. Malenko, L. S. Levina & V. V. Pogodina

Central Research Institute of Epidemiology

Sample details

Collection date
2002
Earliest release date
2008-09-23
Sampling location
Russia (Volgograd)
Isolate name
169-02-Uu

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-09-23
NCBI update date
2016-07-26
INSDC accession

Host

Host

Submission details

Submission ID
FJ154912.1
Submitting group
Date submitted
2026-10-08 17:00:56 UTC
Date released
2026-10-08 17:02:44 UTC

Lineage

Lineage
4

Files

Annotations

Alignment and QC

Total SNPs
257
Total inserted nucs
3
Total deleted nucs
597
Total frame shifts
1
Frame shifts
env:276(nt:1791-1793)
Length
942 (13.9%)
Amino Acid Mutations from founder clade
  • env:T179N
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G1257T
  • C1260T
  • G1263A
  • C1266A
  • C1275T
  • C1278A
  • A1284C
  • A1287C
  • C1293A
  • T1305A
  • A1311C
  • C1314T
  • C1317G
  • A1320G
  • T1323C
  • G1324A
  • C1326T
  • T1332C
Deletions
1789, 1790, 1794, 2191-2784
Insertions
ins_1803:GTT

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:A120T
  • env:T123N
  • env:I126T
  • env:R128L
  • env:L131Q
  • env:K132R
  • env:I135V
  • env:I141A
  • env:E150D
  • env:S151T
  • env:G153S
  • env:Y155L
  • env:T157A
  • env:V159N
  • env:G160A
  • env:T162V
  • env:L167F
  • env:I169V
Deletions

env

env:275
Insertions
N/A

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