This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDQM.1

Display Name: China/LOC_000SDQM.1/2008
H. Zheng, X. Guo, D. Guan, L. Liu, Z. Liu & X. Zhang

Sample details

Collection date
2008
Collection date (lower bound)
2008-01-01
Collection date (upper bound)
2008-12-31
Earliest release date
2010-11-13
Collection country
China
Isolate name
GD08-EV71-205

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-13 14:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Center for Disease Control and Prevention of Guangdong Province, Institution of Microbiology

INSDC

NCBI release date
2010-11-13
NCBI update date
2016-07-25
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
891
Total SNPs
162
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.03%
Total stop codons
0

Submission details

Submission ID
HM037798.1
Submitting group
Date submitted
2025-12-13 14:40:20 UTC
Date released
2025-12-13 14:43:45 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • C2444T
  • A2447G
  • G2459A
  • G2465A
  • C2468T
  • T2471C
  • A2477T
  • T2483C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • A2504C
  • T2508C
  • T2513A
  • C2527A
  • A2528G
  • G2529A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
    • Deletions
    None
    Insertions
    None

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