This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDBE.1

Display Name: Pakistan/LOC_000SDBE.1/2011
M. Umair

Sample details

Collection date
2011
Collection date (lower bound)
2011-01-01
Collection date (upper bound)
2011-12-31
Earliest release date
2020-08-26
Collection country
Pakistan
Isolate name
CCHF-2011-49-NIH-PAK

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-04 00:14insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute of Health, Department of Virology

INSDC

NCBI release date
2020-08-26
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
260
Total SNPs S
38
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
14.40%
Total stop codons S
0

Submission details

Submission ID
MN970069.1.S
Submitting group
Date submitted
2026-02-04 00:13:53 UTC
Date released
2026-02-04 00:17:52 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S

  • S:G276A
  • S:G282A
  • S:C300T
  • S:A309G
  • S:T318G
  • S:A321G
  • S:G339A
  • S:C342A
  • S:G351A
  • S:T366C
  • S:T369C
  • S:A378G
  • S:T387G
  • S:A393T
  • S:A402G
  • S:A405G
  • S:A423G
  • S:C429T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:N150H
    • Deletions
    None
    Insertions
    None

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