This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SBSK.1

China/LOC_000SBSK.1/2019-08
R. Li, Z. Liang, Y. Yang & C. Lin

Beijing Center for Disease Prevention and Control, Institute for Infectious Disease and Endemic Disease Control

Sample details

Collection date
2019-08
Earliest release date
2023-07-04
Sampling location
China
Isolate name
2019CD-SH0129-15

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-17 13:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-07-04
NCBI update date
2023-07-04
INSDC accession

Host

Host

Submission details

Submission ID
OQ626488.1
Submitting group
Date submitted
2026-03-17 13:06:56 UTC
Date released
2026-03-17 13:22:29 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
224
Length
891 (12%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • A2460T
  • T2469C
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2496C
  • T2499C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:T164K
Deletions
N/A
Insertions
N/A

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