This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SBLX.1

Iran/LOC_000SBLX.1
P. Rahimi, A. Roohandeh, A. Sohrabi, E. Mostafavi & G. Bahram Ali

Pasteur Institute of Iran, Department of Virology

Sample details

Earliest release date
2012-08-28
Sampling location
Iran
Isolate name
HEV71.Iran.15

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2012-08-28
NCBI update date
2016-03-10
INSDC accession

Host

Host

Submission details

Submission ID
JX495164.1
Submitting group
Date submitted
2026-10-01 16:14:09 UTC
Date released
2026-10-01 16:17:34 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
54
Total deleted nucs
15
Total frame shifts
2
Frame shifts
VP3:241-242(nt:2431-2438),VP1:57-297(nt:2606-3329)
Length
207 (3%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • T2417C
  • T2418C
  • G2421C
  • A2423G
  • C2428G
  • T2432C
  • T2435C
  • A2438T
  • G2441A
  • C2444T
  • G2446A
  • A2447G
  • G2451T
  • A2453G
  • G2459C
  • C2468T
  • T2471C
  • T2480C
Deletions
2430, 2595-2605, 2613-2615
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:R3K
  • VP1:A5S
  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N

VP3

  • VP3:E237Q
  • VP3:A239G
Deletions

VP1

VP1:53-56

VP3

VP3:240
Insertions
N/A

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