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LOC_000SAPS.1
Download
Download FASTA
Download metadata TSV
India/LOC_000SAPS.1/2016
P. D. Yadav
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2016
Earliest release date
2020-03-22
Sampling location
India (Gujarat State)
Isolate name
NIV1616734
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-03-22
INSDC accession L
MH396667.1
INSDC accession M
MH396668.1
INSDC accession S
MH396669.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH396667.1.L/MH396668.1.M/MH396669.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-03 09:31:12 UTC
Date released
2026-07-03 09:34:30 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000SAPS.1.embl
Alignment and QC
Total SNPs L
1652
Total inserted nucs L
68
Length L
12162 (99.9%)
Total SNPs M
654
Total inserted nucs M
1
Length M
5322 (99.2%)
Total SNPs S
229
Total inserted nucs S
1
Length S
1653 (98.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
T
49
C
T
60
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
76
T
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
Show more
M
C
85
T
T
86
C
T
100
C
A
104
T
A
107
G
G
110
A
C
115
T
A
117
G
C
119
T
T
122
C
C
126
T
A
128
G
G
138
A
G
143
A
A
146
G
G
147
A
G
149
A
T
155
C
Show more
S
T
48
C
G
54
A
A
61
G
C
64
T
G
67
A
T
79
C
A
85
G
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
C
178
A
T
182
C
G
190
A
G
196
A
C
214
T
C
217
T
Show more
Deletions
N/A
Insertions
L
ins_58:T, ins_11917:CA, ins_12054:TACAATTTT, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACGAGATCGGAAGAGACACGTCT
M
ins_5170:G
S
ins_1574:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
M
6
I
GPC:
A
8
V
GPC:
I
9
V
GPC:
G
16
S
GPC:
E
19
K
GPC:
E
26
G
GPC:
R
28
E
GPC:
T
34
V
GPC:
P
42
Q
GPC:
S
44
P
GPC:
P
47
L
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
T
65
A
GPC:
P
80
S
GPC:
P
81
S
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NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
E
168
D
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
K
354
R
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
E
66
G
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
K
91
T
RdRp:
I
114
V
RdRp:
A
122
T
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
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Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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