LOC_000SAPS.1

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India/LOC_000SAPS.1/2014

P. D. Yadav

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date

2014

Earliest release date

2020-03-22

Sampling location

India (Kutch District, Gujarat State)

Isolate name

NIV149247

Data use terms

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2020-03-22

INSDC accession L

MH396649.1

INSDC accession M

MH396650.1

INSDC accession S

MH396651.1

Host

human (Homo sapiens)

Submission details

Submission ID

MH396649.1.L/MH396650.1.M/MH396651.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-07-20 11:52:15 UTC

Date released

2026-07-20 11:55:53 UTC

Lineage

Segment S Lineage

IV.2

Files

Annotations

LOC_000SAPS.1.embl

Alignment and QC

Total SNPs L

1646

Total inserted nucs L

Length L

12151 (99.9%)

Total SNPs M

653

Total inserted nucs M

Length M

5441 (100%)

Total SNPs S

226

Total inserted nucs S

Length S

1735 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

T10C
G23T
A35G
G43T
T49C
T60C
C63G
C64T
T65C
T66C
T68C
G69A
G71C
C76T
C85T
G88A
G93A
A109G

M

C85T
T86C
T100C
A104T
A107G
G110A
C115T
A117G
C119T
T122C
C126T
A128G
G138A
G143A
A146G
G147A
G149A
T155C

S

T1A
C2G
C4T
A5C
T48C
G54A
A61G
C64T
G67A
T79C
G99A
A118G
C142T
T157C
C166T
C178A
T182C
G190A

Deletions

N/A

Insertions

L

ins_58:T, ins_11917:CA, ins_12054:TACAATTTT, ins_12083:GCTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACGATTT

M

ins_0:T, ins_5170:G, ins_5366:TCGACTCCATCTTCGCGGTAGCTGGGACCGCCGTTCAGTCGCCAATATGCAGCTCTTTGTCCGCGCCCAGGAG

S

ins_0:CTAGCAAAATGGAGAATAAAATCGAGGTGAACAACAAAGATGAGATGAACAAGTGGTTTGAAG, ins_1579:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references