This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAPS.1

Uganda/LOC_000SAPS.1/2015-11-08
S. Balinandi, K. Patel, J. Ojwang, J. Kyondo, S. Mulei, A. Tumusiime, B. Lubwama, L. Nyakarahuka, J. D. Klena, J. Lutwama, U. Strher, S. T. Nichol, T. R. Shoemaker & U. Stroeher

CDC, VSPB

Sample details

Collection date
2015-11-08
Earliest release date
2018-04-17
Sampling location
Uganda
Isolate name
Nakaseke_2015

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-04-17
INSDC accession S

Host

Host

Submission details

Submission ID
MH178082.1.S
Submitting group
Date submitted
2026-07-23 09:49:03 UTC
Date released
2026-07-23 09:51:49 UTC

Lineage

Segment S Lineage
II

Files

Annotations

Alignment and QC

Total SNPs S
271
Total inserted nucs S
1
Length S
1610 (96.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T1A
  • A32G
  • A50G
  • G54A
  • A61G
  • C64T
  • G67A
  • A78C
  • A81G
  • A85G
  • A109G
  • G122A
  • A124T
  • A130C
  • T144A
  • C154T
  • T157C
  • C166T
Deletions
N/A
Insertions

S

ins_1581:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:N8T
  • NP:N9S
  • NP:G23S
  • NP:F30Y
  • NP:S52G
  • NP:D116G
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
  • NP:N221D
  • NP:I246V
  • NP:R270K
  • NP:S275K
  • NP:I277V
  • NP:S301G
  • NP:A307P
  • NP:Y311F
Deletions
N/A
Insertions
N/A

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