This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAPS.1

Uganda/LOC_000SAPS.1/2015-11-08
S. Balinandi, K. Patel, J. Ojwang, J. Kyondo, S. Mulei, A. Tumusiime, B. Lubwama, L. Nyakarahuka, J. D. Klena, J. Lutwama, U. Strher, S. T. Nichol, T. R. Shoemaker & U. Stroeher

CDC, VSPB

Sample details

Collection date
2015-11-08
Earliest release date
2018-04-17
Sampling location
Uganda
Isolate name
Nakaseke_2015

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-04-17
INSDC accession S segment

Host

Host

Submission details

Submission ID
MH178082.1.S
Submitting group
Date submitted
2026-09-04 15:29:38 UTC
Date released
2026-09-04 15:32:56 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
274
Total inserted nucs S segment
16
Length S segment
1610 (88.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16G
  • C31G
  • A45G
  • C48T
  • A62C
  • A65G
  • A69G
  • A83G
  • A84G
  • A93G
  • A98T
  • G106A
  • A108T
  • A114C
  • T128A
  • C138T
  • T141C
  • C150T
Deletions
N/A
Insertions

S segment

ins_0:ACTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:N8T
  • NP:N9S
  • NP:K15R
  • NP:Y20F
  • NP:G23S
  • NP:F30Y
  • NP:K45R
  • NP:S52G
  • NP:D116G
  • NP:Q179L
  • NP:D199E
  • NP:N221D
  • NP:R270K
  • NP:S275K
  • NP:I277V
  • NP:A307P
  • NP:Y311F
  • NP:T320S
  • NP:Q370E
  • NP:R428K
Deletions
N/A
Insertions
N/A

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