This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAJ2.1

Iran/LOC_000SAJ2.1
T. Jalai, T. Mohammadi, Z. Fereydouni, M. TavakoliRad, S. Khakifirouz, S. Azadmanjiri, M. Hosseini, M. Ghalejoogh, S. Azizizadeh, M. H. Pouriayevali, V. Baniasadi, M. Fazlalipour & M. Salehi-Vaziri

Pasteur Institute of Iran, Arboviruses and Viral Hemorrhagic Fevers Department (National Ref. Lab)

Sample details

Earliest release date
2019-01-13
Sampling location
Iran
Isolate name
Iran-2963

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-19 14:43insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-13
INSDC accession S

Host

Host

Submission details

Submission ID
MH697888.1.S
Submitting group
Date submitted
2026-06-19 14:43:07 UTC
Date released
2026-06-19 14:46:56 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
72
Length S
516 (30.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C154A
  • C166T
  • G169A
  • T172C
  • C178A
  • T182C
  • G190A
  • T199C
  • C208T
  • A209G
  • C217T
  • G229A
  • G262A
  • A268C
  • G271A
  • T289C
  • C295T
  • A298C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:S52G
  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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