This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6RS.1

Display Name: China/LOC_000S6RS.1/2009
S. Ge, Q. Yan, S. He, S. Zhuang, J. Niu, N. Xia, S.-X. Ge, S.-J. Zhuang, T. Cheng & N.-S. Xia

Sample details

Collection date
2009
Collection date (lower bound)
2009-01-01
Collection date (upper bound)
2009-12-31
Earliest release date
2012-05-01
Collection country
China
Isolate name
XMCDC-0912

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-07 17:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Xiamen University, National Institute of Diagnostics and Vaccine Development in Infectious Diseases

INSDC

NCBI release date
2012-05-01
NCBI update date
2015-04-21
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
894
Total SNPs
224
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.06%
Total stop codons
0

Submission details

Submission ID
JQ320243.1
Submitting group
Date submitted
2026-01-07 17:00:16 UTC
Date released
2026-01-07 17:04:18 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C2443G
  • G2445A
  • G2446T
  • G2447T
  • G2449C
  • A2450C
  • T2451C
  • G2452C
  • G2453T
  • A2455T
  • G2458C
  • C2459G
  • G2461C
  • A2462G
  • C2463T
  • G2475A
  • G2476A
  • C2481A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    VP1

  • VP1:G1F
  • VP1:D2P
  • VP1:G3L
  • VP1:I4F
  • VP1:A5R
  • VP1:D6R
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S

    • VP3

  • VP3:Q242E
    • Deletions
    None
    Insertions
    None

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