This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S6QU.1

Turkey/LOC_000S6QU.1/2017-07
K. Ergunay, E. Dincer, S. Kar, N. Emanet, D. Yalcinkaya, P. F. Polat Dincer, A. Brinkmann, S. Hacioglu, A. Nitsche, A. Ozkul, Y. M. Linton & C. Ergunay

Hacettepe University Faculty of Medicine, Department of Medical Microbiology Virology Unit

Sample details

Collection date
2017-07
Earliest release date
2020-08-25
Sampling location
Turkey
Isolate name
CAP11

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-19 17:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-08-25
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
MN811032.1.L/MN811038.1.M/MN811035.1.S
Submitting group
Date submitted
2026-03-19 17:25:00 UTC
Date released
2026-03-19 17:29:36 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
2684
Total inserted nucs L
49
Total deleted nucs L
20
Length L
12122 (99.9%)
Variant L
False
Total SNPs M
1233
Total inserted nucs M
39
Total deleted nucs M
1
Length M
4772 (87.7%)
Variant M
False
Total SNPs S
70
Length S
1573 (93.6%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & MK299338.1 references

Substitutions

L segment

  • C17A
  • C18T
  • C21A
  • G23A
  • A26G
  • C27T
  • C29A
  • A30C
  • C31T
  • T33G
  • A35G
  • A36G
  • C39T
  • G43C
  • T47A
  • T58C
  • T62G
  • C63A

M segment

  • A661C
  • A666C
  • G670A
  • A671G
  • A673C
  • G674A
  • A679C
  • A680G
  • G684C
  • A688C
  • G689A
  • G692A
  • C694T
  • T696C
  • A697C
  • G701A
  • A708C
  • T711G

S segment

  • A84G
  • T173C
  • G174A
  • A177G
  • T216C
  • A247T
  • A270G
  • T309C
  • A315C
  • C342T
  • A348G
  • C384T
  • A393G
  • C423T
  • T426C
  • T447C
  • A483G
  • G534A
Deletions

L segment

48-55, 11935, 12025-12035

M segment

5195
Insertions

L segment

ins_11969:ACCCAGCAT, ins_11998:TCTGCGTAAAGGGACCTGTGTCATGGTCAATTCT, ins_12087:AG, ins_12108:GGGT

M segment

ins_709:ACATCCCCAGTAGGC, ins_5284:AAATAGTCTGCTAGAGTGCAATTT

Amino acid mutations

Mutations called relative to the NC_005301.3, OR047158.1 & MK299338.1 references

Substitutions

GPC

  • GPC:Q197P
  • GPC:T199A
  • GPC:A200T
  • GPC:N202D
  • GPC:S203T
  • GPC:A205T
  • GPC:A206T
  • GPC:I207T
  • GPC:A209T
  • GPC:N211T
  • GPC:I212T
  • GPC:T213S
  • GPC:S214P
  • GPC:H215V
  • GPC:N216G
  • GPC:I217S
  • GPC:I219P
  • GPC:T221S

NP

  • NP:V40A
  • NP:T65S
  • NP:D266E

RdRp

  • RdRp:D2E
  • RdRp:I13L
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:L64I
  • RdRp:E66K
  • RdRp:S67T
  • RdRp:R70Q
  • RdRp:Q74L
  • RdRp:E75D
  • RdRp:R80K
  • RdRp:K91Q
  • RdRp:L94S
  • RdRp:A122T
  • RdRp:S124N
  • RdRp:D135E
Deletions
N/A
Insertions

GPC

ins_GPC:256:ATHIS

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