This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S65Z.1

Display Name: China/LOC_000S65Z.1
L. Li, Y. He, H. Yang, J. Zhu, X. Xu, J. Dong, Y. Zhu & Q. Jin

Sample details

Collection date (upper bound)
2005-08-15
Earliest release date
2005-08-15
Collection country
China
Isolate name
shenzhen

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-30 12:18insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institute for Viral Disease Control and Prevention, CDC, The State Key Laboratory of Molecular Virology and Genetic Engneering

INSDC

NCBI release date
2005-08-15
INSDC accession CV-A16

Alignment and QC metrics CV-A16

Length CV-A16
3144
Total SNPs CV-A16
653
Total inserted nucs CV-A16
2
Total deleted nucs CV-A16
6
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
42.47%

Submission details

Submission ID
AY895115.1.CV-A16
Submitting group
Date submitted
2025-10-30 12:17:07 UTC
Date released
2025-10-30 12:21:57 UTC

Clade

Clade CV-A16
B2

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • G137A
  • T138A
  • C142T
  • A143G
  • G150A
  • C159T
  • T162C
  • C213T
  • G224A
  • C236T
  • G263A
  • T333C
  • C339T
  • T342A
  • G360A
  • T385C
  • G386A
  • T392C
    • Deletions
    583, 608, 702-704, 739
    Insertions
    ins_613:G, ins_733:C

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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