This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S65Z.1

Senegal/LOC_000S65Z.1/2022-08
O. Sene, S. N. Sagne, D. Ngom, M. Bocoum, M. K. Diallo, A. Khoule, E. T. Faye, S. M. Diop, I. Diallo, C. Loucoubar, M. Diallo, N. Dia, Y. Sall, B. Diop, M. Ndiaye, A. A. Sall, M. Weidmann, M. M. Diagne, M. Fall, O. Faye, E. Simon-Loriere, D. Diallo, M. A. Barry & G. Fall

Institut Pasteur, Dakar, Virology

Sample details

Collection date
2022-08
Earliest release date
2025-01-18
Sampling location
Senegal
Isolate name
sh402429

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-01-18
INSDC accession M segment

Host

Host

Submission details

Submission ID
PP894722.1.M
Submitting group
Date submitted
2026-11-02 13:32:02 UTC
Date released
2026-11-02 13:36:16 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
716
Total inserted nucs M segment
2
Length M segment
5363 (98.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • A2G
  • G65A
  • T78C
  • T81C
  • C82T
  • G103A
  • G113A
  • T115C
  • T116C
  • C118T
  • G120A
  • T122C
  • G124A
  • A127G
  • C133T
  • T136C
  • A139G
  • G142A
Deletions
N/A
Insertions

M segment

ins_0:AA

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:V9I
  • GPC:F10L
  • GPC:C11Y
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:G26E
  • GPC:E28R
  • GPC:N31K
  • GPC:H33D
  • GPC:V34T
  • GPC:D39G
  • GPC:Q42L
  • GPC:S43I
  • GPC:P44S
  • GPC:P53S
  • GPC:V54I
  • GPC:S64T
Deletions
N/A
Insertions
N/A

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