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LOC_000QF9L.1
Download
Download FASTA
Download metadata TSV
Mongolia/LOC_000QF9L.1/2022
J. W. Koehler &
J. Richardson
University of Florida, Environmental and Global Health
Sample details
Collection date
2022
Earliest release date
2025-08-13
Sampling location
Mongolia (Dornogovi)
Isolate name
DoG22-103
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-09 06:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-08-13
INSDC accession L segment
PV955430.1
INSDC accession M segment
PV955429.1
INSDC accession S segment
PV955428.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma asiaticum)
Submission details
Submission ID
PV955430.1.L/PV955429.1.M/PV955428.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-09 06:41:32 UTC
Date released
2026-05-09 06:51:37 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000QF9L.1.embl
Alignment and QC
Total SNPs S segment
230
Total inserted nucs S segment
5
Total deleted nucs S segment
2
Length S segment
1657 (91.6%)
Total SNPs L segment
1587
Total inserted nucs L segment
44
Length L segment
12147 (100%)
Total SNPs M segment
1045
Total inserted nucs M segment
1
Length M segment
5321 (97.5%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
10
C
G
23
T
G
32
A
A
35
G
G
41
A
A
42
G
G
43
T
C
46
T
T
49
C
C
59
T
T
65
C
T
70
C
G
71
C
G
93
A
C
95
A
A
109
G
G
112
A
T
131
A
Show more
M segment
G
46
T
A
47
G
G
52
A
A
53
C
A
57
G
C
62
T
A
66
G
T
67
A
G
69
A
T
79
C
T
87
A
C
88
T
C
92
T
T
94
C
T
96
C
T
98
C
T
101
C
G
103
A
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
A
62
G
A
84
G
A
98
T
A
102
G
C
126
T
C
135
T
T
141
C
C
150
T
T
166
C
A
173
G
C
183
T
A
186
G
Show more
Deletions
S segment
1517, 1518
Insertions
L segment
ins_66:CCT, ins_11932:TT, ins_12092:CCATTTGTTTCAGTTTCATTATTTCCAGGGTGTGGGGGG
M segment
ins_5165:A
S segment
ins_0:CACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
V
GPC:
Y
7
C
GPC:
F
10
L
GPC:
C
15
W
GPC:
G
16
D
GPC:
K
19
G
GPC:
N
21
L
GPC:
G
22
V
GPC:
P
23
S
GPC:
H
24
S
GPC:
G
26
E
GPC:
E
28
Q
GPC:
N
31
E
GPC:
H
33
G
GPC:
V
34
I
Show more
NP
NP:
N
8
S
NP:
Y
20
F
NP:
K
45
R
NP:
F
73
L
NP:
T
102
I
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
R
195
L
NP:
D
199
E
NP:
V
205
T
NP:
K
252
N
NP:
G
259
R
NP:
R
270
K
NP:
S
275
N
NP:
A
285
T
NP:
R
428
M
RdRp
RdRp:
S
6
N
RdRp:
L
7
I
RdRp:
S
19
T
RdRp:
I
45
V
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
Q
74
H
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
83
D
RdRp:
K
91
R
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
C
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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