This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QF8N.1

Guinea/LOC_000QF8N.1/2022-04-08
E. V. Naidenova, Y. M. Krasnov, K. S. Zakharov, D. A. Agafonov, A. M. Senichkina, N. P. Guseva, S. D. Katyshev, T. A. Polunina, N. V. Kotova, G. A. Gurkin, M. Y. Kartashov, A. V. Shipovalov, A. S. Kabanov, S. Boumbaly, M. G. Diallo & M. B. Bah

Russian Antiplague Research Institute 'Microbe', Microbiology

Sample details

Collection date
2022-04-08
Earliest release date
2025-03-16
Sampling location
Guinea (N'Zerekore)
Isolate name
5542

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-09 07:35insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-03-16
INSDC accession L segment
INSDC accession M segment

Host

Host

Submission details

Submission ID
PV210235.1.L/PV168397.1.M
Submitting group
Date submitted
2026-06-09 07:35:01 UTC
Date released
2026-06-09 07:39:42 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
341
Total inserted nucs L segment
6
Total deleted nucs L segment
339
Total unknown nucs L segment
1394
Length L segment
11044 (82.4%)
Total SNPs M segment
221
Total unknown nucs M segment
1151
Length M segment
2910 (32.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

L segment

  • G93A
  • A113G
  • G116A
  • G175A
  • G190A
  • C193T
  • C205T
  • G217A
  • C223T
  • A231G
  • C244T
  • T250C
  • T253C
  • T254A
  • C313T
  • G328A
  • C332T
  • T340C

M segment

  • A1561G
  • C1573T
  • C1582G
  • A1585G
  • A1591G
  • T1594C
  • G1597A
  • G1608A
  • A1609G
  • T1612A
  • G1617A
  • T1627A
  • T1630C
  • G1638A
  • G1642A
  • T1645G
  • A1654G
  • T1655C
Deletions

L segment

2855-2896, 10775-11071
Insertions

L segment

ins_388:NNG, ins_6457:ANA

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:R507K
  • GPC:R510K
  • GPC:R517K
  • GPC:S523P
  • GPC:V541I
  • GPC:V561I
  • GPC:R579K
  • GPC:S592T
  • GPC:I598T
  • GPC:K603R
  • GPC:Y606F
  • GPC:V630A
  • GPC:T742A
  • GPC:Y1077F
  • GPC:V1100I
  • GPC:S1103T
  • GPC:I1118V
  • GPC:V1137I

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:A14T
  • RdRp:N52S
  • RdRp:Y60N
  • RdRp:N206Y
  • RdRp:V352I
  • RdRp:I505T
  • RdRp:C648S
  • RdRp:K673R
  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:P774L
  • RdRp:G778D
  • RdRp:N779S
  • RdRp:S782D
  • RdRp:I783V
Deletions

RdRp

RdRp:927-940, RdRp:3567-3665
Insertions

RdRp

ins_RdRp:104:X, ins_RdRp:2127:X

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