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LOC_000QF7Q.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_000QF7Q.1/2019-08-16
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2019-08-16
Earliest release date
2025-07-27
Sampling location
Tajikistan
Isolate name
CCHFV_C25
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-09 06:41
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-07-27
INSDC accession L segment
PV953856.1
INSDC accession S segment
PV953855.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PV953856.1.L/PV953855.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-09 06:41:32 UTC
Date released
2026-05-09 06:51:37 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000QF7Q.1.embl
Alignment and QC
Total SNPs L segment
1622
Total inserted nucs L segment
44
Total deleted nucs L segment
3
Total ambiguous nucs L segment
26
Length L segment
12126 (99.6%)
Total SNPs S segment
233
Total inserted nucs S segment
16
Total ambiguous nucs S segment
9
Length S segment
1673 (91.3%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
C
59
T
C
64
T
T
65
G
G
71
T
A
72
T
C
82
T
C
85
T
G
90
A
G
93
A
A
109
G
G
112
A
T
121
C
G
130
T
T
131
A
C
136
T
Show more
S segment
C
15
T
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
T
63
C
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
166
C
A
173
G
G
174
A
G
180
A
Show more
Deletions
L segment
11996, 12086, 12087
Insertions
L segment
ins_66:CC, ins_11927:GT, ins_12051:TAGTGCAATTCTTTCTAC, ins_12108:TTGATTATTTCTAGGGTGGGGG
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
&
OL774851.1
references
Substitutions
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
I
395
V
NP:
R
428
K
RdRp
RdRp:
R
5
K
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
V
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
T
165
M
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
S segment
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