This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QC8R.1

Nigeria/LOC_000QC8R.1/1966
L. Peng, S. Hirsch, G. Kocher, M. Mehta & M. Holbrook

NIH/NIAID, IRF

Sample details

Collection date
1966
Earliest release date
2024-11-09
Sampling location
Nigeria
Isolate name
CCHFV_IRF414_S

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-09
INSDC accession S segment

Host

Host
Is lab host
True

Submission details

Submission ID
PQ463984.1.S
Submitting group
Date submitted
2026-05-09 06:41:32 UTC
Date released
2026-05-09 06:51:37 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
120
Total deleted nucs S segment
1
Length S segment
1588 (88%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C31G
  • G34A
  • A38G
  • A51G
  • A83G
  • A84G
  • A98T
  • A162C
  • A173G
  • C183T
  • A186G
  • A213G
  • T219C
  • G231A
  • A255G
  • T279C
  • G282A
  • G306A
Deletions

S segment

1562
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K15R
  • NP:Y20F
  • NP:K45R
  • NP:A124T
  • NP:N125G
  • NP:Q179L
  • NP:R195H
  • NP:V246I
  • NP:G301S
  • NP:R428K
  • NP:I436V
Deletions
N/A
Insertions
N/A

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