This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000QC7T.1

Nigeria/LOC_000QC7T.1/1966
L. Peng, S. Hirsch, G. Kocher, M. Mehta & M. Holbrook

NIH/NIAID, IRF

Sample details

Collection date
1966
Earliest release date
2024-11-09
Sampling location
Nigeria
Isolate name
CCHFV_IRF414_M

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-09
INSDC accession M segment

Host

Host
Is lab host
True

Submission details

Submission ID
PQ463983.1.M
Submitting group
Date submitted
2026-05-09 06:41:32 UTC
Date released
2026-05-09 06:51:37 UTC

Clade & Lineage

Closest reference M segment
M (MH396653.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
663
Length M segment
5283 (96.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MH396653.1 references

Substitutions

M segment

  • G65A
  • T78C
  • T81C
  • C82T
  • G103A
  • G113A
  • T115C
  • T116C
  • C118T
  • T122C
  • G124A
  • A127G
  • C133T
  • A139G
  • G142A
  • A143G
  • A149C
  • C151T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MH396653.1 references

Substitutions

GPC

  • GPC:V9I
  • GPC:F10L
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:G26E
  • GPC:E28R
  • GPC:N31K
  • GPC:H33D
  • GPC:V34T
  • GPC:D39G
  • GPC:S41N
  • GPC:Q42P
  • GPC:P44S
  • GPC:P53S
  • GPC:V54I
  • GPC:P56L
  • GPC:S64T
Deletions
N/A
Insertions
N/A

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