This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3YK.1

Display Name: Japan/LOC_000Q3YK.1
T. Munemura, M. Saikusa, C. Kawakami, H. Shimizu, M. Oseto, A. Hagiwara, H. Kimura & T. Miyamura

Sample details

Collection date (upper bound)
2002-09-18
Earliest release date
2002-09-18
Collection country
Japan
Isolate name
HC30TS/EV71/Kanagawa/2000

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Virology; 1-2-17 Takigashira, Isogo, Yokohama, Kanagawa 235-0012

INSDC

NCBI release date
2002-09-18
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
1038
Total SNPs EV-A71
158
Total inserted nucs EV-A71
2
Total deleted nucs EV-A71
0
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
13.98%

Submission details

Submission ID
AB081391.1.EV-A71
Submitting group
Date submitted
2025-10-13 08:43:45 UTC
Date released
2025-10-13 08:44:58 UTC

Clade

Clade EV-A71
B4

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T135C
  • T138C
  • T142C
  • G143A
  • A146G
  • A148G
  • T149C
  • T155C
  • C156T
  • G157A
  • C158T
  • A159G
  • A180T
  • A188G
  • G208T
  • A212G
  • A228G
  • C229T
    • Deletions
    None
    Insertions
    ins_739:TC

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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