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LOC_000Q3TV.1
Download
Download FASTA
Download metadata TSV
China/LOC_000Q3TV.1/1984
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Wuhan Institute of Virology, Chinese Academy of Sciences
Sample details
Collection date
1984
Earliest release date
2024-12-21
Sampling location
China
Isolate name
BA84021
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 15:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-12-21
INSDC accession L
OR823871.1
INSDC accession M
OR823874.1
INSDC accession S
OR823877.1
Submission details
Submission ID
OR823871.1.L/OR823874.1.M/OR823877.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 15:36:26 UTC
Date released
2026-02-27 15:40:27 UTC
Host
Host
Ixodoidea
Files
Annotations
LOC_000Q3TV.1.embl
Alignment and QC
Total SNPs S
239
Total inserted nucs S
45
Total deleted nucs S
38
Length S
1728 (95.3%)
Variant S
False
Total SNPs L
1627
Total inserted nucs L
390
Length L
12498 (100%)
Variant L
False
Total SNPs M
394
Total inserted nucs M
86
Length M
5323 (97%)
Variant M
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
T
1
A
T
3
A
C
4
G
A
5
G
G
8
T
A
15
C
T
16
A
G
23
T
T
24
C
A
35
G
G
43
C
T
49
C
A
50
G
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
Show more
M segment
C
3
T
C
7
G
G
8
A
C
9
A
C
10
A
G
11
T
A
13
C
C
15
T
C
16
G
C
18
G
C
21
A
G
22
C
C
23
G
G
24
T
G
26
A
T
27
G
C
28
T
G
29
A
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
G
75
A
A
84
G
A
98
T
A
102
G
C
123
T
C
126
T
T
141
C
C
150
T
T
166
C
C
171
A
A
173
G
C
183
T
Show more
Deletions
S segment
1574-1586, 1663-1687
Insertions
L segment
ins_0:CCTGTGACATGGGAAAGGGGTCATTAATTTGTAATTTCTGGATTTAAACACATGATCATCAGCACGAGATGTTTTCTTCCAGCTGTTTACTTTTTGGTTTCCTGACAAGGGGTCCTGCTTCCTAGCTCTGCTGAACTCTGGGATT, ins_17:ACCCAGCTCAATGTTTAATTTGAGTGTGTGGGGGCTTAGAGGCTAGTTATGGC, ins_58:T, ins_11930:AA, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATACCAGGGATTAAATTAGGTCAGCCACATTCATGGGCATTTCCTCCACTGTAGTATTGTAGAAAGTCT...
Show more
M segment
ins_0:AAAAAACCTTTAATAGTGAATAATTAACAAAACAGCTTTTAACCATTGTAGGCCTAAAAGCAGCCACCAATAAAGAAAGCGTTCAA
S segment
ins_0:AGAGTAGTGGTATTTCACCGGCGGCCCGCGGCAAAGAAACACGT, ins_1514:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
E
6
K
GPC:
V
14
I
GPC:
Q
17
P
GPC:
M
35
V
GPC:
T
36
A
GPC:
G
38
S
GPC:
A
39
M
GPC:
D
48
N
GPC:
S
50
T
GPC:
E
58
K
GPC:
A
60
T
GPC:
T
62
V
GPC:
A
63
V
GPC:
A
77
V
GPC:
Y
80
H
GPC:
A
96
P
GPC:
I
102
T
GPC:
V
104
A
Show more
NP
NP:
Y
20
F
NP:
D
44
E
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
T
320
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
T
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
T
165
A
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
T
200
A
RdRp:
S
205
P
RdRp:
N
206
Y
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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