This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3TV.1

China/LOC_000Q3TV.1/1988
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1988
Earliest release date
2023-08-21
Sampling location
China
Isolate name
88168

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-25 15:11insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047182.1.L/OR047162.1.M/OR047142.1.S
Submitting group
Date submitted
2026-03-25 15:11:29 UTC
Date released
2026-03-25 15:22:20 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs S
224
Total inserted nucs S
145
Total deleted nucs S
7
Length S
1810 (100%)
Variant S
False
Total SNPs L
1662
Total inserted nucs L
231
Length L
12339 (100%)
Variant L
False
Total SNPs M
1059
Total inserted nucs M
335
Length M
5701 (100%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C2A
  • T3C
  • A6C
  • A9T
  • A14C
  • T16A
  • G23T
  • A35G
  • G43C
  • T49C
  • G56A
  • T58C
  • C59T
  • T62C
  • C64T
  • T65G
  • T67C
  • G71T

M

  • C2A
  • C4T
  • G8T
  • A9G
  • A10G
  • A13T
  • C14T
  • G50T
  • A51G
  • G56A
  • A57C
  • A70G
  • T71A
  • A80G
  • C81T
  • G84T
  • C85T
  • T86C

S

  • A7T
  • G8T
  • A9G
  • G15T
  • G17T
  • G20T
  • T48C
  • G54A
  • A61G
  • C64T
  • G67A
  • G91A
  • G99A
  • A118G
  • C139T
  • C142T
  • T157C
  • C166T
Deletions

S

21-25, 1611, 1612
Insertions

L

ins_0:ATTAGCTCTAGAAT, ins_16:GTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTC, ins_67:CC, ins_11928:TG, ins_12065:CAATTATTAGTTTGCCTT, ins_12089:TCACTATTCAT, ins_12108:TTATTTCCAGGGTGTGGGGGGAACGATTTCTTTAGCCGTTGCGGGCCGGCCTTCTCTGCGCTCGGGCCTTGAGGTGATCTCCGAGCGCCCCGGACCCCTCCTTCCTCGCCGTCCCCCTCGGCTCGGCCGCTCGCCTCTCACA

M

ins_0:TCTCTAAGAGACCTGAGTGAGCCCCACCCCCAACTCCTAAGCAGCGGCTCAACAAGGAGGTGGCATCACAGACTCTGATGAGGTATGAACAGGCCTCTCACGAGTGAAAACTTCTGGTTTCAGTGTTTTTGAAAATGTTTCTGCTTCTGTGTGCTTCTTGTGGACTGTAGGTGGTCTACCCTGATGGTGTGTGTTAGCTTTAATATCTGATACGTCCTCTATCCGAGGACAATA, ins_17:GAAGTAGGAGTTGGG, ins_5171:C, ins_5366:GAGCTCACGTTGCATTGAAGAAGAAACCTCGGGGAGGTCTGGAGCTGTCTTTCCTTCCCTCCCTACCCGGCGGCTCCTCCACTCT

S

ins_0:TCTTCAAACCACTTGTTCATTTCATCTTTGTTATTCACCTCGATTTTATTCTCCATTTTGCA, ins_10:TTGTTCACAGTCAGTTACAGATTGAACTCCTGTTCT, ins_1530:T, ins_1577:A, ins_1672:CCGCCGCCGAGGACTCAGCTGCCTCCCCCTCGAGCCCCCTCGCTT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:I9V
  • GPC:C15W
  • GPC:G16S
  • GPC:G18K
  • GPC:E19G
  • GPC:T20S
  • GPC:S23L
  • GPC:H24S
  • GPC:E26K
  • GPC:R28Q
  • GPC:N30S
  • GPC:K31N
  • GPC:D33S

NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:I157M
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Q
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S281T
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue