This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3Q1.1

Display Name: France/LOC_000Q3Q1.1/2019-07-12
M. Bisseux, A. Mirand, C. Henquell & J.-L. Bailly

Sample details

Collection date
2019-07-12
Collection date (lower bound)
2019-07-12
Collection date (upper bound)
2019-07-12
Earliest release date
2025-01-01
Collection country
France
Isolate name
EV-A71_190033738402_FRA19

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-25 10:16insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centre National de Reference Enterovirus et Parechovirus - CHU Clermont ferrand, virologie

INSDC

NCBI release date
2025-01-01
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
7408
Total SNPs EV-A71
1416
Total inserted nucs EV-A71
11
Total deleted nucs EV-A71
2
Total ambiguous nucs EV-A71
0
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
99.88%
Total stop codons EV-A71
0

Submission details

Submission ID
OQ091577.1.EV-A71
Submitting group
Date submitted
2025-11-25 10:15:56 UTC
Date released
2025-11-25 11:10:04 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T11C
  • G12T
  • T13G
  • G14T
  • T17G
  • G19T
  • T20G
  • T36C
  • T51C
  • A54T
  • G58A
  • A60T
  • T61C
  • T63A
  • T67A
  • C69T
  • A76G
  • C77T
    • Deletions
    7335, 7336
    Insertions
    ins_104:T, ins_128:CT, ins_7391:CTATTCTG

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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