This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3P3.1

Display Name: China/LOC_000Q3P3.1
L. Gong, Y. Lu, J. Yan, Q. Ge, Y. Feng, H. Mao & M. Li

Sample details

Collection date (upper bound)
2005-03-05
Earliest release date
2005-03-05
Collection country
China
Collection subdivision level 1
Zhejiang
Isolate name
ZJ-CHN-6-03

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-09 17:50insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Zhejiang Provincial Center for Disease Control and Prevention, Institute of Virology

INSDC

NCBI release date
2005-03-05
NCBI update date
2005-03-05
INSDC accession

Alignment and QC metrics

Length
891
Total SNPs
152
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
12.03%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
AY905619.1
Submitting group
Date submitted
2025-12-09 17:50:26 UTC
Date released
2025-12-09 17:53:39 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • G2459A
  • G2465A
  • C2468T
  • T2471C
  • T2489C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • T2508C
  • T2513A
  • C2527A
  • A2528G
  • G2529A
  • C2534T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
    • Deletions
    None
    Insertions
    None

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