This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3N5.1

China/LOC_000Q3N5.1/1977
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1977
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA7708

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-09 14:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047177.1.L/OR047157.1.M/OR047137.1.S
Submitting group
Date submitted
2026-04-09 14:51:52 UTC
Date released
2026-04-09 15:02:52 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs L
1629
Total inserted nucs L
227
Total deleted nucs L
17
Length L
12318 (100%)
Variant L
False
Total SNPs M
597
Total inserted nucs M
175
Total deleted nucs M
11
Length M
5530 (100%)
Variant M
False
Total SNPs S
199
Total inserted nucs S
83
Length S
1632 (92.6%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C2T
  • C4G
  • A6C
  • A9T
  • T10A
  • A11G
  • C13G
  • T16C
  • C17A
  • C39A
  • G41A
  • G45A
  • C46G
  • T49C
  • A50T
  • G51A
  • T55G
  • G56C

M

  • C4T
  • A7G
  • A9T
  • A11T
  • T68C
  • G76A
  • A80G
  • C85T
  • A88G
  • C92T
  • A107G
  • A112G
  • A117G
  • C119T
  • C126T
  • A128G
  • G136A
  • A146G

S

  • T1C
  • C2T
  • T3G
  • C4G
  • A6G
  • A7C
  • G8T
  • A10T
  • A11T
  • A13C
  • C14T
  • T48C
  • G54A
  • A61G
  • C64T
  • G67A
  • G91A
  • G99A
Deletions

L

18-34

M

5289-5299
Insertions

L

ins_0:GCTGTA, ins_58:AATATGCATAGGGAGAAGACAATATTGGCAAAAATAAA, ins_11925:GT, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTATCCCCATCCCCCGCCAGCGTCTGGGCCTCGTCCCCTTCTCTCTGTCTCCCTCTCGTCCCCCATCTCGTCCCCCGACACTGACACCCCGATACTCCTGAACTCTCTTCAGTCCCAGCCTTGCTCTCCAAT

M

ins_0:AAAGAATTGAAAGGCAAAGATTTCCATATAT, ins_16:ATTCCTCCGGGTTCAAATAATGATTTGCTGAGAGCTCTGTCTTATCAATATACTTACTTTCTTGTGCTT, ins_5168:G, ins_5366:TAGCCTGTCTTCCTGTAGTAAAGGAGGTTCAAAATTTAATAAATGTGGGCATATATAAGTTACTACCAGAGAAC

S

ins_0:CACTATGGTCACCGCCTTGAAGGGTTTCACTGACATCTGTCCAGAGTCTACCCCAGATCCAAAGTCGGGGAAAGGCAAAGGC, ins_1530:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:I9V
  • GPC:C15Y
  • GPC:G22R
  • GPC:H24S
  • GPC:R28E
  • GPC:D33N
  • GPC:T34V
  • GPC:M35V
  • GPC:N41S
  • GPC:P42Q
  • GPC:S44P
  • GPC:P47L
  • GPC:A51T
  • GPC:S53P
  • GPC:I54V
  • GPC:P58S
  • GPC:L70P

NP

  • NP:R15K
  • NP:D44E
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A

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