This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3N5.1

China/LOC_000Q3N5.1/2004
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
2004
Earliest release date
2023-08-21
Sampling location
China
Isolate name
YL04041

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-30 18:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
OR047167.1.L/OR047147.1.M/OR047127.1.S
Submitting group
Date submitted
2026-03-30 18:11:55 UTC
Date released
2026-03-30 18:17:58 UTC

Host

Host

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1)
Closest reference S segment
S1 (OL774851.1)

Files

Annotations

Alignment and QC

Total SNPs L segment
1476
Total inserted nucs L segment
60
Total deleted nucs L segment
2
Length L segment
12004 (98.7%)
Total SNPs M segment
41
Total inserted nucs M segment
198
Length M segment
5599 (100%)
Total SNPs S segment
232
Total inserted nucs S segment
16
Length S segment
1673 (91.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

L segment

  • C2A
  • C4T
  • A6T
  • A7T
  • G8A
  • A9T
  • T12A
  • C13A
  • A15G
  • T16G
  • C18G
  • G23T
  • G32A
  • A35G
  • A42G
  • G43C
  • T49C
  • C59T

M segment

  • G1C
  • C2A
  • C4A
  • A5G
  • G6A
  • C7A
  • C10A
  • G11A
  • A12G
  • T14A
  • C15G
  • C17A
  • C18G
  • C21G
  • G24A
  • G29A
  • C30G
  • G31T

S segment

  • T16A
  • C22A
  • C31G
  • T32C
  • G34A
  • G35A
  • A45G
  • A51G
  • C81T
  • A84G
  • A98T
  • A102G
  • C126T
  • T141C
  • C150T
  • T166C
  • C171T
  • A173G
Deletions

L segment

67, 68
Insertions

L segment

ins_0:TCTCCACATTTGGAGCAATACAGTCGAATCTTTAAATTTTTAACTGGTTTCTTTTTAC, ins_11922:TC

M segment

ins_0:GAGAGCACTGGGTAGAGGTGGGCACAGGTGTGGGTGCCCTCCCCAGCATCACTGTCCCATGGCGAGAGGTCAGAAAGGCAAACAAGCAATGGGGGTAGATGCTGAGCAGGGAGGGGCCCTGAAGCAGGACCTGGGGACAGCCAAGGACAACTATTTTGTGAGAGAGGAATGAAACCTTGCAGGTCCTGC, ins_39:GTT, ins_5401:CAGCCA

S segment

ins_0:TCTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

GPC

  • GPC:T57I
  • GPC:E58V
  • GPC:L185P
  • GPC:S203N
  • GPC:P1068L
  • GPC:A1506V

NP

  • NP:Y20F
  • NP:K45R
  • NP:D116E
  • NP:N125D
  • NP:A146T
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:D262N
  • NP:R270K
  • NP:M353L
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:E126D
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:I223M
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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