This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3N5.1

China/LOC_000Q3N5.1/1975
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1975
Earliest release date
2023-08-21
Sampling location
China
Isolate name
Ha75001

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-23 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Submission details

Submission ID
OR047169.1.L/OR047149.1.M/OR047129.1.S
Submitting group
Date submitted
2026-03-23 16:00:01 UTC
Date released
2026-03-23 16:03:50 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs M segment
651
Total inserted nucs M segment
81
Total deleted nucs M segment
11
Length M segment
5483 (99.2%)
Variant M segment
False
Total SNPs S segment
218
Total inserted nucs S segment
38
Total deleted nucs S segment
2
Length S segment
1688 (91.5%)
Variant S segment
False
Total SNPs L segment
1608
Total inserted nucs L segment
60
Length L segment
12168 (100%)
Variant L segment
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T10C
  • G23T
  • A35G
  • G43C
  • T49C
  • A50G
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A
  • G71T
  • G88A
  • G93A
  • A109G
  • A124G
  • T131A
  • C136T

M segment

  • A1T
  • T64C
  • G65A
  • G72A
  • A76G
  • T78C
  • C82T
  • A84G
  • C88T
  • A108G
  • T116C
  • C118T
  • A127G
  • G132A
  • C133T
  • A139G
  • A143G
  • G145A

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
  • C126T
  • T141C
  • C150T
  • T166C
  • C171A
  • A173G
  • C183T
Deletions

M segment

5285-5295

S segment

1596, 1597
Insertions

L segment

ins_58:T, ins_11925:GT, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTTCTGAA

M segment

ins_0:CTCATCTTGACTGCGTGCCGCCAC, ins_5166:A, ins_5351:TATCTTACCTACTAGGTATTGAACCAGTTTCTGCATTGCTGAATCAATCTCCCAAG

S segment

ins_0:CCCATCAATGGCAATGGCAAACATCAAAGAAACACGT, ins_1514:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:F10L
  • GPC:C15Y
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:H24S
  • GPC:G26E
  • GPC:N31K
  • GPC:H33N
  • GPC:M35V
  • GPC:D39G
  • GPC:P47L
  • GPC:A51T
  • GPC:P56L
  • GPC:P58S
  • GPC:S64T
  • GPC:L70P

NP

  • NP:Y20F
  • NP:D44E
  • NP:K45R
  • NP:T111I
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:A229T
  • NP:D262E
  • NP:R270K
  • NP:S275N
  • NP:Y291L
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:L90I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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