This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3KB.1

China/LOC_000Q3KB.1/1984
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1984
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA84051

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-20 13:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
OR047170.1.L/OR047150.1.M/OR047130.1.S
Submitting group
Date submitted
2026-04-20 13:49:12 UTC
Date released
2026-04-20 13:56:04 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
241
Total inserted nucs S segment
5
Total deleted nucs S segment
41
Length S segment
1705 (96.4%)
Total SNPs L segment
1656
Total inserted nucs L segment
84
Length L segment
12186 (100%)
Total SNPs M segment
1094
Total inserted nucs M segment
59
Length M segment
5508 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T10C
  • G23T
  • A35G
  • G43C
  • T49C
  • G56A
  • T58C
  • C59T
  • T62C
  • C64T
  • T65G
  • T67C
  • G71T
  • A72T
  • A73G
  • G93A
  • A109G
  • T131A

M segment

  • A9C
  • G46T
  • A47G
  • G52A
  • A53C
  • G65A
  • A66G
  • T67A
  • A76G
  • C77T
  • T78C
  • G80T
  • A84G
  • A86G
  • C88T
  • C92T
  • T94C
  • T96C

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
  • C126T
  • T141C
  • C150T
  • T166C
  • C171A
  • A173G
  • C183T
Deletions

S segment

1596, 1597, 1654-1692
Insertions

L segment

ins_67:CC, ins_11928:TG, ins_12065:CAATTATTAGTTTGCCTT, ins_12089:TCACTATTCAT, ins_12108:TTATTTCCAGGGTGTGGGGGGAACGAGATGGGAAGGGCACACCTCTGACCG

M segment

ins_5165:A, ins_5361:TGCAGCTCAACATGGCGCCGAAAGACAAGAAGCCTAAGAAGTCCACCTGGAGGTTT, ins_5457:GG

S segment

ins_0:CGT, ins_1514:T, ins_1730:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:F10L
  • GPC:C15W
  • GPC:G16S
  • GPC:G18E
  • GPC:K19G
  • GPC:T20S
  • GPC:N21H
  • GPC:P23L
  • GPC:H24S
  • GPC:G26K
  • GPC:E28Q
  • GPC:N30S
  • GPC:H33S

NP

  • NP:Y20F
  • NP:D44E
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:I157M
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Q
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:S281T
Deletions
N/A
Insertions
N/A

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