This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3HF.1

Display Name: Malaysia/LOC_000Q3HF.1
M. J. Cardosa & D. Perera

Sample details

Collection date (upper bound)
2006-01-31
Earliest release date
2006-01-31
Collection country
Malaysia
Collection subdivision level 1
Sarawak
Isolate name
SB12869-SAR-03

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institute of Health and Community Medicine, Universiti Malaysia Sarawak

INSDC

NCBI release date
2006-01-31
NCBI update date
2016-07-26
INSDC accession

Alignment and QC metrics

Length
891
Total SNPs
166
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.03%
Total stop codons
0

Submission details

Submission ID
AY905545.1
Submitting group
Date submitted
2025-12-24 08:53:43 UTC
Date released
2025-12-24 08:54:53 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • T2462C
  • T2480C
  • A2491G
  • C2495A
  • C2503A
  • A2504G
  • T2507C
  • T2508C
  • A2510G
  • T2513A
  • C2519T
  • C2525T
  • C2527A
  • G2529A
  • C2534A
  • A2537G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
    • Deletions
    None
    Insertions
    None

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