This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q33A.1

Spain/LOC_000Q33A.1/2016-11-11
M. P. Sanchez-Seco, M. J. Sierra, A. Estrada-Pe, F. Valcarcel, R. Molina, E. R. de Arellano, A. S. Olmeda, L. G. San Miguel, M. Jimenez, L. J. Romero, A. Negredo & A. A. Negredo

National Center of Microbiology, Institute of Health Carlos III, Arbovirus and Imported Viral diseases

Sample details

Collection date
2016-11-11
Earliest release date
2023-02-13
Sampling location
Spain
Isolate name
Caceres_2071_2016

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-03 15:47insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-02-13
INSDC accession S

Host

Host

Submission details

Submission ID
OK082063.1.S
Submitting group
Date submitted
2026-06-03 15:47:14 UTC
Date released
2026-06-03 15:51:13 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
48
Length S
591 (35.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C166T
  • C178A
  • G189A
  • G190A
  • C208T
  • C214T
  • G229A
  • C235T
  • C244T
  • G271A
  • T289C
  • C295T
  • A298T
  • T313C
  • A322G
  • A325G
  • G328A
  • A331G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:R45K
  • NP:S109N
  • NP:V115I
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue