This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q33A.1

South_Africa/LOC_000Q33A.1/1985
F. J. Burt, J. T. Paweska, B. Ashkettle & R. Swanepoel

NHLS/UFS, Medical Virology

Sample details

Collection date
1985
Earliest release date
2008-12-30
Sampling location
South Africa
Isolate name
SPU 415/85

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession L segment

Host

Host

Submission details

Submission ID
FJ435378.1.L
Submitting group
Date submitted
2026-09-04 15:29:37 UTC
Date released
2026-09-04 15:31:04 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
46
Length L segment
754 (6.23%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T2182C
  • C2200T
  • T2227A
  • G2233A
  • A2263G
  • C2287T
  • T2290C
  • T2293C
  • G2302A
  • T2347C
  • C2353T
  • T2359C
  • G2367A
  • G2374A
  • A2375G
  • G2385A
  • G2401A
  • A2412G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:R764K
  • RdRp:T767A
  • RdRp:R770K
  • RdRp:N779S
  • RdRp:I783T
  • RdRp:S789T
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
Deletions
N/A
Insertions
N/A

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