This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q33A.1

Canada/LOC_000Q33A.1/2014-08-21
C. Therrien, E. Fournier, A. Ludwig, J. Menard, H. Charest & C. Martineau

Laboratoire de sante publique du Quebec, Bacteriologie

Sample details

Collection date
2014-08-21
Earliest release date
2019-08-31
Sampling location
Canada
Isolate name
VN4365CPR1/Canada/2014

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-08-31
NCBI update date
2019-08-31
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH819463.1
Submitting group
Date submitted
2026-07-29 08:58:08 UTC
Date released
2026-07-29 09:13:25 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
67
Total ambiguous nucs
1
Length
10374 (94.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:T231A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • A1401G
  • T1442C
  • C1465T
  • T1488C
  • A1657G
  • G1806A
  • T1965C
  • T2241C
  • C2466T
  • T2836C
  • C2925T
  • T3138C
  • C3504T
  • T3537C
  • C3594T
  • C3680T
  • C3808T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

env

  • env:V159A
  • env:L167F
  • env:T231A
Deletions
N/A
Insertions
N/A

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