This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q33A.1

Thailand/LOC_000Q33A.1/2012-11-21
J. Puenpa, J. Mauleekoonphairoj, P. Linsuwanon, K. Suwannakarn, T. Chieochansin, S. Korkong, A. Theamboonlers & Y. Poovorawan

Center of Excellence in Clinical Virology, Department of Pediatrics

Sample details

Collection date
2012-11-21
Earliest release date
2014-06-20
Sampling location
Thailand
Isolate name
CAV16_THA/CU988/2012

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-06-20
NCBI update date
2014-06-20
INSDC accession

Host

Host

Submission details

Submission ID
KF661129.1
Submitting group
Date submitted
2026-10-21 10:32:33 UTC
Date released
2026-10-21 10:39:03 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
77
Length
386 (5.21%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions
  • T2808C
  • G2811A
  • T2814C
  • C2818T
  • A2820G
  • C2829T
  • A2844T
  • G2847A
  • T2850C
  • A2859T
  • C2861T
  • T2862G
  • A2871C
  • A2886C
  • A2889C
  • G2895A
  • T2896C
  • G2913C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:A139V
  • VP1:I179V
  • VP1:L183M
  • VP1:A213E
  • VP1:P215L
  • VP1:S217A
  • VP1:A220L
Deletions
N/A
Insertions
N/A

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