This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q33A.1

Germany/LOC_000Q33A.1/2018-01-01
U. Ziegler, M. Keller, F. Michel, M. Eiden, W. Gaede, K. Albrecht, E. van der Grinten & M. H. Groschup

Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute of Novel and Emerging Infectious Diseases

Sample details

Collection date
2018
Earliest release date
2018-12-29
Sampling location
Germany
Isolate name
ED-I-82/18-UM

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-22 14:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-12-29
NCBI update date
2018-12-29
INSDC accession

Host

Host

Submission details

Submission ID
MH974751.1
Submitting group
Date submitted
2026-05-22 14:37:53 UTC
Date released
2026-05-22 14:53:57 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
128
Total inserted nucs
29
Total deleted nucs
11
Length
870 (7.73%)
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G10116A
  • T10123C
  • G10125C
  • A10127C
  • G10128A
  • C10138A
  • T10140A
  • T10143G
  • A10149T
  • A10161G
  • C10179A
  • G10185T
  • A10190G
  • A10191G
  • C10200T
  • C10203T
  • T10209C
  • A10212T
Deletions

10421, 10487-10494, 10904, 10921
Insertions

ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10427:G, ins_10462:A, ins_10483:GTT, ins_10501:T

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:E816A
  • NS5:K837R
  • NS5:A860T
  • NS5:Q869H
  • NS5:A877S
  • NS5:I878V
  • NS5:D881E
  • NS5:K892R
  • NS5:T898I
  • NS5:L899V
Deletions
N/A
Insertions
N/A

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