This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q31E.1

China/LOC_000Q31E.1/1984
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1984
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA84002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047171.1.L/OR047151.1.M/OR047131.1.S
Submitting group
Date submitted
2026-02-27 15:36:26 UTC
Date released
2026-02-27 15:40:27 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
220
Total inserted nucs S
58
Total deleted nucs S
13
Length S
1700 (91.6%)
Variant S
False
Total SNPs L
1609
Total inserted nucs L
135
Length L
12167 (99.4%)
Variant L
False
Total SNPs M
400
Total inserted nucs M
103
Length M
5384 (97.8%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

L segment

  • G88A
  • G93A
  • A109G
  • G116A
  • A124G
  • T131A
  • C136T
  • T139C
  • C148T
  • T151C
  • T154C
  • T160C
  • C199T
  • C208T
  • A220G
  • T229C
  • T241C
  • T250C

M segment

  • G1T
  • C2G
  • C7T
  • G8A
  • C9G
  • G11A
  • A12T
  • C15G
  • C17T
  • C18T
  • C20T
  • G24C
  • C25A
  • G26T
  • T27G
  • G29A
  • C30T
  • G32T

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • G75A
  • A84G
  • A98T
  • A102G
  • C123T
  • C126T
  • T141C
  • C150T
  • T166C
  • C171A
  • A173G
  • C183T
Deletions

S segment

1574-1586
Insertions

L segment

ins_11930:AA, ins_12054:TACAGTTCT, ins_12083:GCTATTT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTTAAAGACATCAATCCCCCCTCTACCCACGTTGACACAGACAGCTCCGGTAGTGGTTCTTTGTCCTTATTAAACCATGGACTT

M segment

ins_0:GCTTTGTGCCACACTGGAGTTCGTTCTGGCCTCATCAGCAAGTCCTCCACCGCTCCAAAGAATCGGGCAAAAGATGAAGTTAATTAACACCC, ins_21:TCAAAGATTAA

S segment

ins_0:ATTTCTAAAAGCACGGAAGATCTATCTCCTCAGAGAAGTGGTCCAACTGGAGCTGGT, ins_1514:T

Amino acid mutations

Mutations called relative to the NC_005301.3, OR047158.1 & OL774851.1 references

Substitutions

GPC

  • GPC:E6K
  • GPC:V14I
  • GPC:Q17P
  • GPC:M35V
  • GPC:T36A
  • GPC:G38S
  • GPC:A39M
  • GPC:D48N
  • GPC:S50T
  • GPC:E58K
  • GPC:A60T
  • GPC:T62V
  • GPC:A63V
  • GPC:A77V
  • GPC:Y80H
  • GPC:A96P
  • GPC:I102T
  • GPC:V104A

NP

  • NP:Y20F
  • NP:D44E
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:T320S
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:A14T
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:T165A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:T200A
  • RdRp:S205P
  • RdRp:N206Y
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue