This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q31E.1

Turkey/LOC_000Q31E.1/2019
A. T. Kalaycioglu, T. Dal, O. Ari, A. Engin, M. Bakir & R. Durmaz

Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Sample details

Collection date
2019
Earliest release date
2023-08-15
Sampling location
Turkey
Isolate name
TR-YOZGAT-C28M-2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-15
INSDC accession L
INSDC accession M

Submission details

Submission ID
OQ954477.1.L/OQ935553.1.M
Submitting group
Date submitted
2026-03-13 15:41:04 UTC
Date released
2026-03-13 15:51:39 UTC

Host

Host

Files

annotations

Alignment and QC

Total SNPs L
51
Length L
468 (3.87%)
Variant L
False
Total SNPs M
106
Length M
673 (12.5%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C6715T
  • A6724G
  • A6730G
  • G6733T
  • T6742C
  • T6745C
  • G6748A
  • C6757T
  • T6760A
  • C6766T
  • T6769C
  • A6784T
  • T6800C
  • G6805A
  • A6808T
  • A6811G
  • T6841C
  • A6850G

M

  • G1739A
  • C1745T
  • C1754T
  • T1763C
  • C1766T
  • C1781T
  • A1784G
  • A1805G
  • C1808T
  • C1811T
  • T1820C
  • A1823G
  • G1828A
  • T1853C
  • G1865A
  • A1867C
  • T1868C
  • A1874G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:R579K
  • GPC:N592T
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:A630V
  • GPC:T633S
  • GPC:I637V
  • GPC:K669H
  • GPC:I670V
  • GPC:K675R
  • GPC:K688R
  • GPC:L707F
  • GPC:I711L
  • GPC:L714S
  • GPC:V718I
  • GPC:R724K
  • GPC:L725F
  • GPC:T742A

RdRp

  • RdRp:A2330T
  • RdRp:I2365T
Deletions
N/A
Insertions
N/A

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