This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q31E.1

China/LOC_000Q31E.1/1978
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1978
Earliest release date
2023-08-21
Sampling location
China
Isolate name
HF7802

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-04 18:29insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L
INSDC accession M
INSDC accession S

Submission details

Submission ID
OR047168.1.L/OR047148.1.M/OR047128.1.S
Submitting group
Date submitted
2026-03-04 18:29:04 UTC
Date released
2026-03-04 18:32:42 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs S
235
Total inserted nucs S
36
Total deleted nucs S
1
Length S
1700 (92.2%)
Variant S
False
Total SNPs L
1622
Total inserted nucs L
159
Length L
12262 (100%)
Variant L
False
Total SNPs M
576
Length M
5175 (94.8%)
Variant M
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • A7C
  • T10G
  • C13T
  • A14C
  • A15C
  • T16C
  • C17A
  • C19T
  • C20G
  • C21T
  • G23C
  • T24C
  • C29T
  • A35G
  • G43C
  • T49C
  • A50G
  • C63G

M segment

  • A48G
  • T64C
  • G65A
  • G72A
  • A76G
  • T78C
  • C82T
  • A84G
  • C88T
  • A108G
  • T116C
  • C118T
  • A127G
  • G132A
  • C133T
  • A139G
  • A143G
  • G145A

S segment

  • C5T
  • T7A
  • C9A
  • C11G
  • C13T
  • C15G
  • T16G
  • G17C
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • A83G
  • A84G
  • A98T
  • A102G
  • C126T
Deletions

S segment

1600
Insertions

L segment

ins_31:TATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGGC, ins_58:T, ins_11925:GT, ins_12027:CTCT, ins_12082:CATCCTGCTATT, ins_12108:TTCATTATTTCCAGGGTGTGGGGGGAACGATTTCTTCAAGCACCTGTCTTCTGCCACTGCCTCTTC

S segment

ins_0:CTCA, ins_18:CACAACCAAAAATATAAGAGTTCGGTTCCCAG

Amino acid mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:F10L
  • GPC:C15Y
  • GPC:K19E
  • GPC:N21H
  • GPC:P23S
  • GPC:H24S
  • GPC:G26E
  • GPC:N31K
  • GPC:H33N
  • GPC:M35V
  • GPC:D39G
  • GPC:P47L
  • GPC:A51T
  • GPC:P56L
  • GPC:P58S
  • GPC:S64T
  • GPC:L70P

NP

  • NP:K15R
  • NP:Y20F
  • NP:K45R
  • NP:D116E
  • NP:N125G
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:K206I
  • NP:R270K
  • NP:S275N
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:I45M
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
Deletions
N/A
Insertions
N/A

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